Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J03
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60610.1 68418.m07606 F-box family protein contains F-box dom...    27   9.8  
At3g48230.1 68416.m05262 expressed protein several hypothetical ...    27   9.8  

>At5g60610.1 68418.m07606 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 388

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 485 NYINTYIVIARSVNRCKNQITQK 553
           +Y N Y+++ RS+  CK+ +T K
Sbjct: 107 HYANPYVILPRSLYTCKSLVTLK 129


>At3g48230.1 68416.m05262 expressed protein several hypothetical
           proteins - Arabidopsis thaliana contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 373

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +1

Query: 49  DHSMSSLRWCFKCWRSEVYNKTSCVPAAAPAFHIIFTAF 165
           DH   S    F  W  + Y KT C+    P F  + + F
Sbjct: 185 DHYHDSQPRLFVYWTKDTYQKTGCLNLECPGFVQVTSEF 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,915,932
Number of Sequences: 28952
Number of extensions: 226357
Number of successful extensions: 391
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)