Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J02
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 29 0.71
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 1.2
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 1.6
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.6
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 27 2.2
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 27 2.9
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 3.8
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 6.6
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 6.6
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.6
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 8.8
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 105 LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 212
+ V D C+R D+ +P I +YQ +P + AD+
Sbjct: 77 MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112
>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 286
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 207 DIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL 335
DIV F ++ K + +T+LVD SK +T+I YL
Sbjct: 228 DIVFGFWNNIIEKRFSKSFIDSYLTRLVDIAISKNVTEIMYYL 270
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/110 (20%), Positives = 47/110 (42%)
Frame = +3
Query: 12 IHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKV 191
+ + D A+D + + ++ LA L +PDA AD P +V +L
Sbjct: 1082 VEDIVSLDRAQDYAETVEQPEVWSRLAKAQLDGIRIPDAIESYLKADDPSNYSEVIELAS 1141
Query: 192 PNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAG 341
+ + ++ + ++ D+ L L+ K+ Q+T+++ +L G
Sbjct: 1142 RAGKYEELIKYLLMARSKMHEPDVDSAL---LIAYAKTNQLTEMETFLIG 1188
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 142 VQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHAC 2
V+R + SGS+ G S SA A S SLA + P+ A C
Sbjct: 123 VRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLAKTQPERATPEVC 169
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 608 VQENVFNSTGAEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFIFV-ECITSSF 450
+ E +F++ I ++F +++I F+ C H V N LF+F IT+SF
Sbjct: 15 ILEVLFSAISFGISIYIKVFGRSSI--VTFFLLCFHLVPNALFLFPWTIITTSF 66
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.6 bits (56), Expect = 2.9
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Frame = -1
Query: 295 LSTNCVISGITRXXXXXXXXXXXSKETTISACLFGT---LS**TSPMA*GL-SASVQRTQ 128
++TN V + I++ S TT S+ + +S +S M+ SAS
Sbjct: 413 INTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAH 472
Query: 127 ASGSTAGSSPVRASAA-YPLARSQAWCKSLAAS 32
+SGS++GSS +SA+ + L+R + LA S
Sbjct: 473 SSGSSSGSSSATSSASTFNLSRFYVFAGILAIS 505
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 574 NGRSRSDFSLKTILDKPSFILSV 506
N R++++ SLK + +PSF+L+V
Sbjct: 16 NTRTKAELSLKQLEKEPSFVLAV 38
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 154 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASV 29
L S +R + ++ PVR S A R +W + LAA++
Sbjct: 627 LPNSKKRFSSFSGSSSKLPVRPSTALTDKRKPSWSRRLAAAI 668
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -3
Query: 194 WHFELINVSDGVRLVRVGAAHASVRQ 117
W +LIN++DG+ +++ H+ Q
Sbjct: 798 WSGDLINIADGIHEIKLQRVHSQDHQ 823
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 121 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTA 17
GS + PV+ S YP+A Q S+ +V DT+
Sbjct: 285 GSHNSAKPVQRSHTYPVAVPQNTSDSVGNAVTDTS 319
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 25.4 bits (53), Expect = 6.6
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = -1
Query: 592 LTAPAR-NGRSRSDFSLKTILDKPSFILSVSIKSITFFSYLS-------NVSHPVLTKG 440
+T P R NG S F+L T PS+ LS + F Y+S + SHP ++ G
Sbjct: 1 MTGPFRYNGGSVRSFALTTNFSFPSYDLSFNETEHGVFCYVSRPLTKERSCSHPYISLG 59
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.0 bits (52), Expect = 8.8
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 381 DLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSL 560
DLKL++ KL K ER ++ +T EKN+ + + ++ + L+ K
Sbjct: 326 DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEA 385
Query: 561 L----DLPFRAGAVK 593
L D FRA +K
Sbjct: 386 LISHYDDDFRAKELK 400
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,220
Number of Sequences: 5004
Number of extensions: 47332
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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