Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J02
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228... 33 0.18
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 29 2.2
08_02_1557 + 27867977-27869134 29 3.0
01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940... 28 5.2
08_01_0303 + 2493388-2493954 28 6.8
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44... 28 6.8
01_06_0240 + 27794741-27795466 28 6.8
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447... 27 9.0
11_05_0096 - 19029632-19029937,19030376-19031197 27 9.0
07_03_1361 - 25998873-25999223,25999311-25999461,25999546-259997... 27 9.0
04_04_0236 + 23825368-23825763,23826229-23828667 27 9.0
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 27 9.0
02_03_0143 + 15685242-15686298,15688167-15688265,15688998-156890... 27 9.0
>10_08_0824 +
20821724-20822137,20822457-20822543,20822729-20822829,
20822917-20822967,20823616-20823790,20823878-20824192,
20824504-20824707,20824799-20825314,20825400-20825609,
20826092-20826280,20827254-20827405,20827685-20827837,
20827925-20828006,20828086-20828475
Length = 1012
Score = 33.1 bits (72), Expect = 0.18
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 222 FETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL-AGHTSKYPYPILYDTDLKLKS 398
FET + E S D L+T+++DNL + + Y + TS Y YP L D + L
Sbjct: 540 FETKAALENSSSDDDSQLLTRIIDNLVDESHESNQTYSDSNDTSLYNYPSLSDWN-DLNE 598
Query: 399 SKLHFDDKERYE 434
++ F+D ER E
Sbjct: 599 VEI-FEDIERRE 609
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +3
Query: 387 KLKSSKLHFDDKERYERM-PFVKTGCDTFDKYEKNVIDFMD---TLKIKLGL----SNIV 542
+LKS KLH +D+E ++ PFVK + ++V+ L IKL L N
Sbjct: 1739 RLKSIKLHKNDEELLSKLDPFVKLLAECLSSKHESVLSISFRCLALLIKLPLPSLKDNAN 1798
Query: 543 LSEKSLLDLPFRAG 584
L + L+D+ RAG
Sbjct: 1799 LIKNVLMDIAQRAG 1812
>08_02_1557 + 27867977-27869134
Length = 385
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 97 VRASAAYPLARSQAWCKSLAASVP 26
V AS+AYP Q+ CKS AAS P
Sbjct: 218 VAASSAYPYRARQSSCKSSAASSP 241
>01_07_0131 +
41292800-41293400,41293522-41293649,41293759-41294019,
41294154-41294416,41294507-41294831
Length = 525
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 406 YISTTKSATSVCLLSKLDVIHSTNMKRTLSTLW--IHSK*NLVCP 534
YIS+T T V L LD +H++ +K LW H NL+ P
Sbjct: 341 YISSTLFYTDVTYLEFLDRVHTSELKLRAQGLWEVPHPWLNLLIP 385
>08_01_0303 + 2493388-2493954
Length = 188
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 9 CIHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRC 140
C HA+S AA +LH+ C R + L T L A VRC
Sbjct: 15 CHHAISRRSAAVELHR-CSRRRRPSPLTTTVALTRRRSPAAVRC 57
>08_01_0064 +
444888-444959,445073-445277,445736-445901,446029-446251,
446982-447058,447370-447557,447845-447942,448202-448335,
448421-448555,448832-448960,449263-449632,449897-450018,
450155-450274,450396-450626,450706-450894,450978-451089,
451193-451438
Length = 938
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 336 AGHTSKYPYPILYDTDLKLKSSKLHFDD-KERYERMPFVKTGCDTFDKYEKNVI 494
AG S P I+ D +++KLHFDD +RY + TF+K + ++
Sbjct: 300 AGRLSPKPDIIVQRYDPTYEATKLHFDDVAQRYGHPIIILNLTKTFEKRPREMM 353
>01_06_0240 + 27794741-27795466
Length = 241
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 105 LPAVLPDACVRCTDADKPHAIGDV 176
+PA P A VRCT A KP A G +
Sbjct: 24 IPAATPSAIVRCTAAPKP-ATGSI 46
>11_08_0023 +
27741775-27742475,27744163-27744413,27744557-27744715,
27744976-27745409,27745537-27746076
Length = 694
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 563 QKRLFTQNNIGQT-KFYFECIHKVDNVLFIFVECITSSFDKRHTL 432
+++++ Q+ + T Y C+ +D + + V C+ + DKR T+
Sbjct: 631 RRKMYDQDMLSSTDSLYPYCMECLDRMAAVAVRCLKNKVDKRPTM 675
>11_05_0096 - 19029632-19029937,19030376-19031197
Length = 375
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 42 KDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGD 173
+ L D+ G+ A+A + A PD ++CT D PH + D
Sbjct: 206 RGLRSLVDVGGGHGAVAKA--IAAAFPD--IKCTVMDLPHVVAD 245
>07_03_1361 -
25998873-25999223,25999311-25999461,25999546-25999783,
25999898-26000108,26000210-26000340,26000909-26001037,
26001329-26002130
Length = 670
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 154 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWC 50
L+A+ T A+ G+ + YP+ S AWC
Sbjct: 165 LNATADYTAAAARRFGTGEISFDPTYPVIYSMAWC 199
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 330 YLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNV 491
Y+ T+ + +DT +KL+S + +DD +++ P V +G F++ NV
Sbjct: 588 YITPETTIKTFIEQFDTAMKLRSDREAYDDFRSFQQRPQVLSGL-LFEEQFANV 640
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 27.5 bits (58), Expect = 9.0
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 7/191 (3%)
Frame = +3
Query: 3 QACIHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQ 182
++ +H+ +D+ ACD + L + +L +AC R + K G+
Sbjct: 1278 RSVMHSPQESDSVNFSSPACDPQQEEEEPNLDEDMHDILNEACTRA-ELLKKEVDGE--S 1334
Query: 183 LKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKYPY 362
K + D++++ + Q +E+SY V + + ++Q +I H + Y
Sbjct: 1335 SKRRKAEMDLLIALQRVQESEKSYLQEVNQ--RKETERTLARQRLEIDEMKRRHNTLYDE 1392
Query: 363 PILYDTD-----LKLKSSKLHFDDKERYERMP--FVKTGCDTFDKYEKNVIDFMDTLKIK 521
L DT L+ S++ K+ + + F++ C+ K++K +D + L+
Sbjct: 1393 --LQDTKKQKLLLEQHISEIKSAAKDYVQEITEYFIQESCEEAKKFQKIKMDLLAMLQRV 1450
Query: 522 LGLSNIVLSEK 554
+ N+ +EK
Sbjct: 1451 KDVENLNRNEK 1461
>02_03_0143 +
15685242-15686298,15688167-15688265,15688998-15689072,
15689309-15689364,15689786-15689875
Length = 458
Score = 27.5 bits (58), Expect = 9.0
Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Frame = +3
Query: 171 DVYQLKV-PNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHT 347
D Y+ + PN Q+D +S T + ++L + V+ ++K+ T+ +LA
Sbjct: 184 DDYRCSILPNHQSDFSLSSPDTLTLITRDENLAVAD----VEEWRAKEYTEK--WLAESE 237
Query: 348 SKYPYPILYDTDLKLKSSKLHFDDK-ERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKL 524
+KY +PI + T K++ F K ++R+P+ K ++K E + I ++ L+ ++
Sbjct: 238 TKYAFPINFPTGFKIEKG---FRGKLGNWQRLPYTK----AYEKNELHPIRNIERLEKRI 290
Query: 525 -GLSNIVLS 548
G+ + +LS
Sbjct: 291 VGILHELLS 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,901,616
Number of Sequences: 37544
Number of extensions: 298877
Number of successful extensions: 911
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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