Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I22
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747...    32   0.28 
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771...    31   0.49 
03_05_1110 - 30466886-30467317,30467522-30467603,30467749-30467810     29   1.5  
12_01_0313 + 2388488-2388560,2389285-2389462,2390221-2390331,239...    27   7.9  
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    27   7.9  

>02_03_0273 +
           17173983-17174339,17174423-17174575,17174638-17174700,
           17174943-17175026,17175120-17175242,17175466-17175519,
           17175669-17175764,17176163-17176258,17177179-17177324,
           17178503-17178632,17178697-17179272,17179364-17179462,
           17179535-17179687,17179794-17180558,17181384-17181683
          Length = 1064

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 96  RVHKASKEYR-VNEEKSVLLEEMAHLAHQVHH 188
           R+ +  + YR   +EK VLLEE+ HL +Q+H+
Sbjct: 731 RIQEELERYRNFKDEKEVLLEEIQHLKNQLHY 762


>02_05_0512 +
           29675835-29675901,29676681-29676813,29677020-29677164,
           29677586-29678407
          Length = 388

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +1

Query: 13  PWCSRIEWC-PRNERRPRVPW 72
           PW S   WC PR  R PR PW
Sbjct: 158 PWWSPSRWCCPRGSRIPRSPW 178


>03_05_1110 -
          30466886-30467317,30467522-30467603,30467749-30467810
          Length = 191

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 7  WCPWCSRIEWCPRNERR 57
          WC WCS + W PR  RR
Sbjct: 21 WCNWCSSVVW-PRQPRR 36


>12_01_0313 +
           2388488-2388560,2389285-2389462,2390221-2390331,
           2391280-2391362,2391826-2392027,2392078-2392101,
           2392234-2392408,2392482-2392683,2393897-2394036
          Length = 395

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 81  DNQDLRVHKASKEYRVNEEKSVLLEEMAHLAHQVH 185
           + +DL ++K+ ++ +V+EEK   +EE +      H
Sbjct: 115 EEEDLTMYKSHQQLQVSEEKDTTIEENSEKKWHAH 149


>07_03_1291 +
           25545749-25546262,25546989-25547669,25547693-25547751,
           25549152-25549242,25549330-25549743,25550191-25550243,
           25550947-25551177,25551492-25551708,25551790-25551890,
           25552446-25552532,25553536-25553676,25553839-25553961,
           25554070-25554522,25554931-25555308,25555410-25556060,
           25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 139 FSSFTLYSLEALWTRRSWLSLRTREPSVS 53
           F SF L  L  LW  R  +  R R PS+S
Sbjct: 341 FQSFFLLCLWTLWNHRHDVVFRERPPSIS 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,913,332
Number of Sequences: 37544
Number of extensions: 229532
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)