Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I22
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   5e-22
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   7e-18
SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)                     65   2e-11
SB_39426| Best HMM Match : C4 (HMM E-Value=0)                          39   0.002
SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_56014| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)                 28   3.5  
SB_54003| Best HMM Match : Lac_bphage_repr (HMM E-Value=2.5)           28   3.5  
SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)           28   3.5  

>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score =  100 bits (240), Expect = 5e-22
 Identities = 41/63 (65%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
 Frame = +1

Query: 292  FAIIY-RRNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPIP 468
            ++++Y + NE+AH QDLG  GSC+++FSTMPFLFC++N+VCN ASRND S+WLST +PIP
Sbjct: 1600 YSLLYVQGNERAHGQDLGSPGSCIQRFSTMPFLFCNINNVCNLASRNDYSFWLSTPEPIP 1659

Query: 469  MMP 477
            MMP
Sbjct: 1660 MMP 1662



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = +2

Query: 212  GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDETKR 322
            G  L RHSQ   VP+C      LW+GYSLLY+   +R
Sbjct: 1574 GFFLTRHSQTVRVPRCPEDRPPLWEGYSLLYVQGNER 1610



 Score = 34.7 bits (76), Expect = 0.040
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 188  CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDETKRHITKISD--MQVHAY 361
            CA  +  + ++ V HSQ   VP C  G   LW GYS L     +  + ++S   M VH+ 
Sbjct: 1675 CAVCEVSSHVMAV-HSQSITVPSCPSGWSPLWQGYSFLMPYIGRCAVCEVSSHVMAVHSQ 1733

Query: 362  ESSV 373
              +V
Sbjct: 1734 SITV 1737



 Score = 34.3 bits (75), Expect = 0.053
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 188  CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYSLL 301
            CA  +  + ++ V HSQ   VP C  G   LW GYS L
Sbjct: 1718 CAVCEVSSHVMAV-HSQSITVPSCPSGWSPLWQGYSFL 1754



 Score = 31.9 bits (69), Expect = 0.28
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 331  QDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLST 453
            Q L   GSC+  F   PF+ C     C+Y   +  S+WL+T
Sbjct: 1766 QLLSSPGSCLEDFRAHPFIECHGRGTCHYYG-STYSFWLAT 1805


>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 87.0 bits (206), Expect = 7e-18
 Identities = 34/63 (53%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
 Frame = +1

Query: 292  FAIIY-RRNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPIP 468
            ++++Y + ++ +H QDLG AGSC+++F+TMP+L+C++   CNYASRND SYWLST   +P
Sbjct: 1486 YSLLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCNIFGKCNYASRNDYSYWLSTDNQVP 1545

Query: 469  MMP 477
            MMP
Sbjct: 1546 MMP 1548



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +2

Query: 212  GILLVRHSQREVVPQCEPGHVKLWDGYSLLYI 307
            G  +V+HSQ    P+C P + KLWDGYSLLY+
Sbjct: 1460 GFYIVKHSQTTTPPECPPTYDKLWDGYSLLYV 1491



 Score = 37.9 bits (84), Expect = 0.004
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 331  QDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLST 453
            Q LG +GSC+  F   PF  C     C+Y + N  S+WL+T
Sbjct: 1592 QSLGSSGSCLESFRPNPFTECHGRGTCHYYA-NKYSFWLAT 1631


>SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)
          Length = 176

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 25/51 (49%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
 Frame = +1

Query: 292 FAIIY-RRNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSY 441
           ++++Y + ++ +H QDLG AGSC+++F+TMP+L+C++   CNYASRND S+
Sbjct: 90  YSLLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCNIFGKCNYASRNDYSH 140



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +2

Query: 212 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYI 307
           G  +V+HSQ    P+C P + KLWDGYSLLY+
Sbjct: 64  GFYIVKHSQTTTPPECPPTYDKLWDGYSLLYV 95


>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
          Length = 188

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 331 QDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLST 453
           Q LG +GSC+  F   PF+ C     C+Y + N  S+WL+T
Sbjct: 75  QSLGSSGSCLESFRPNPFIECHGRGTCHYYA-NKYSFWLAT 114



 Score = 31.9 bits (69), Expect = 0.28
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 212 GILLVRHSQREVVPQCEPGHVKLWDGYSLL 301
           G ++  HSQ   +P C  G   LW GYS L
Sbjct: 34  GPVMAVHSQSTTLPTCPGGWSSLWSGYSFL 63


>SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -2

Query: 187 WCTW--WARWAISSSNTDFSSFTLYSLEALW-TRRSWLSLRTREPSVSFHSWGTIQSWST 17
           W T+  W+ +   S++ ++S++  +S    W T  +W    T     ++++W T  +W+T
Sbjct: 48  WSTYNNWSTYNNWSTHNNWSTYNNWSTHNNWSTYNNW---STHNNWSTYNNWSTHNNWNT 104

Query: 16  R 14
           R
Sbjct: 105 R 105


>SB_56014| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
          Length = 300

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 302 IIANNRPIILHVLVHIEVQLPFGCVALI 219
           I+ NNR + LH+++   V +PF C++L+
Sbjct: 136 IVTNNRVVKLHIIIW-TVTVPFTCLSLL 162


>SB_54003| Best HMM Match : Lac_bphage_repr (HMM E-Value=2.5)
          Length = 252

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/91 (20%), Positives = 39/91 (42%)
 Frame = -1

Query: 431 SFRLA*LQTSLRSQKRNGIVLNFRTHEPAYPRSWLCAFSFRLYIIANNRPIILHVLVHIE 252
           S R+    T+ + Q    I+     H  +Y   W+   + RL I+ + R +  HV+    
Sbjct: 111 SHRVLHRYTAQKHQHSEHIIPVLAPHMCSYVVYWVVISAARLVILCSRR-LCGHVVSEFP 169

Query: 251 VQLPFGCVALIIYQLSNL*WRMVHLVGQVGH 159
           +     C+   +    ++  ++ H +G +GH
Sbjct: 170 LVYCCECLVAYVVHARHVLAKLNHAIGPIGH 200


>SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)
          Length = 930

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 143 RFLLVHPVFLGSLVDPEVLVVLADQGTLGLLSFLGHHSILEHQG 12
           R LLVH   LG++V     V+L  +G LG +       +LEH+G
Sbjct: 213 RVLLVHRGGLGTVVRGNPRVLLEHRGGLGTVVTGNPRVLLEHRG 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,140,549
Number of Sequences: 59808
Number of extensions: 277810
Number of successful extensions: 670
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)