Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I22
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar...    34   0.057
At3g26600.1 68416.m03320 armadillo/beta-catenin repeat family pr...    29   2.1  
At3g06520.1 68416.m00756 agenet domain-containing protein contai...    29   2.1  
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ...    28   3.7  
At4g29310.1 68417.m04190 expressed protein                             28   3.7  
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea...    28   3.7  
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con...    27   5.0  
At3g16460.1 68416.m02098 jacalin lectin family protein contains ...    27   6.5  
At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ...    27   6.5  
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,...    27   8.7  

>At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar to
           class I chitinase GI:7798656 from [Halimolobos perplexa
           var. perplexa]; contains Pfam profile PF00182: Chitinase
           class I; identical to cDNA chitinase-like protein 1
           (CTL1) CTL1-ELP1 allele GI:17226328
          Length = 321

 Score = 33.9 bits (74), Expect = 0.057
 Identities = 11/39 (28%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -2

Query: 202 ICSGAW-CTWWARWAISSSNTDFSSFTLYSLEALWTRRS 89
           +C+  W C+WW+++  + + +D+  F +Y  E L+++R+
Sbjct: 41  VCTQGWECSWWSKYCCNQTISDY--FQVYQFEQLFSKRN 77


>At3g26600.1 68416.m03320 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 615

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -1

Query: 341 PRSWLCAFSFRLYIIANNRPIILHVLVHIEVQLPFGCVALIIY 213
           P ++LCA   +  I     P+++ ++ ++E Q+   C+AL+ Y
Sbjct: 511 PENFLCAEHSKNIIEYGAIPLLMKLIRNVEQQMQLQCLALLCY 553


>At3g06520.1 68416.m00756 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 466

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 398 RSQKRNGIVLNFRTHEPAYPRSWLCAFSFRLYIIANNRPIILHV 267
           R Q   G ++  R+ E AY  SW CA    L ++ +++ I+ H+
Sbjct: 166 RDQYEKGALVEVRSEEKAYKGSWYCARI--LCLLGDDKYIVEHL 207


>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
           zinc dependent protease [Arabidopsis thaliana]
           GI:7650138; contains Pfam profile PF00004: ATPase AAA
           family
          Length = 855

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 93  LRVHKASKEYRVNEEKSVLLEEMAHLAHQVHHAPLQ 200
           L+VH  +K +R  +EK  LL+E+A        A LQ
Sbjct: 497 LKVHARNKFFRSEDEKEELLQEVAENTEDFTGAELQ 532


>At4g29310.1 68417.m04190 expressed protein
          Length = 424

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 91  SWLSLRTREPSVS-FHSWGTIQSWSTRGTI 5
           +WL LR     VS +  WG +++W  RG I
Sbjct: 272 AWLILRPHGTCVSSWKPWGRLEAWRERGAI 301


>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to Dystrophia myotonica-containing WD repeat
           motif protein  DMR-N9 protein  (DMWD) (DM9) (SP:Q08274)
           [Mus musculus]; simlar to DMR protein GI:18028289 [Homo
           sapiens];
          Length = 558

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 197 TDYLTGILLVRHSQREVVPQCEPGHVKLW 283
           T+ L+G++    +Q  VV  C  GH+K+W
Sbjct: 487 TEPLSGLMF---TQESVVTACREGHIKIW 512


>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Cyanogenic Beta-Glucosidase
           (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
           beta-glucosidase GI:10834547
          Length = 577

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 278 LWDGYSLLYIDETKRHITKISDMQVHAYESSV 373
           +WD +SL Y + TK H   ++    H Y+  +
Sbjct: 59  IWDHFSLTYPERTKMHNADVAIDFYHRYKDDI 90


>At3g16460.1 68416.m02098 jacalin lectin family protein contains
           Pfam profile: PF01419 jacalin-like lectin domain;
           similar to myrosinase binding protein [Brassica napus]
           GI:1711296, GI:1655824, myrosinase-binding protein
           homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
           profile PF01419 jacalin-like lectin family
          Length = 705

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = -1

Query: 374 VLNFRTHEPAYPRSWLCAFSFRLYIIANNRPII--LHVLVHIEVQLPFGCVALIIYQLSN 201
           +L F   E  YP  ++ A       I  N PI+  L    +  V +PFG  A   ++   
Sbjct: 618 LLGFEEFELDYPSEYITAVDGTYDAIFGNEPIVNMLRFTTNKRVSIPFGIGAGTAFEFKK 677

Query: 200 L*WRMVHLVGQVG 162
              ++V   G+ G
Sbjct: 678 DGQKIVGFHGRAG 690


>At2g13680.1 68415.m01508 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1923

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 316 EKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASR 426
           EKAH  D    G  VR+F T+ F   + ++  + ASR
Sbjct: 71  EKAHRLDPSSGGRGVRQFKTLLFQRLERDNASSLASR 107


>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase GI:7939617 from
           [Lycopersicon esculentum]
          Length = 887

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 191 ATTDYLTGILLVRHSQREVVPQCEPGHV 274
           +T DY+ G + +     EV   CE GHV
Sbjct: 779 STPDYINGTMSINSVAPEVHLHCEDGHV 806


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,676,395
Number of Sequences: 28952
Number of extensions: 189488
Number of successful extensions: 485
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)