Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I20
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 29 0.51
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 28 0.68
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 27 2.1
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 2.1
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 4.8
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 6.3
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 6.3
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 8.4
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 25 8.4
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 28.7 bits (61), Expect = 0.51
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 120 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 242
K L + + + YYK+ K Y +AN D K VE
Sbjct: 89 KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 0.68
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Frame = +3
Query: 105 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDNYTNKKAVEEFL 251
VER+K++ +L Q D + ++DE YY + D Y+ EA +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.6 bits (56), Expect = 2.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 273 DNRFCTISRILQQLSYWCSYRCW 205
D + T++++ + LS W YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261
>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 132
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 3 KTVLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKV----LSLFQDVDQVNVDDE 170
K ++ A +I +++ + +H +D V + QK+ S D D+ V DE
Sbjct: 28 KLIMKFADMIKNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDE 87
Query: 171 YYKIGKDYDVEA 206
+ +I +++ ++A
Sbjct: 88 FMQIKEEFPMKA 99
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 138 QDVDQVNVDDEYYKIGKDYDVEANIDN 218
Q+V Q+N +DEY + + D EA IDN
Sbjct: 55 QNVMQMNFEDEYSEFSNE-DDEAEIDN 80
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 105 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 254
+ R+KK+L+L + D + V+DE Y + D +++ K FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 201 EANIDNYTNKKAVEEFLKLYRIGYLPK 281
E + N+T ++A+EE KL LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 408 NEGQFL-YAYYIAVIQRNDTHG 470
N G FL YA++ VI+ D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 24.6 bits (51), Expect = 8.4
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +3
Query: 111 RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEF-LKLYRIGYLPKYY 287
RQ+K LSL D+DQ + ++ + NY + V F L+ GY YY
Sbjct: 160 RQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYY 219
Query: 288 -EFSIFYQKLREEAIALFHLFYYAKDFETFYKSAA 389
+F + ++ L+ L Y + + K A
Sbjct: 220 IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVA 254
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 105 VERQKKVLSLFQDVDQVNVDDEYY 176
+ER+KK L+L + D + V+DE Y
Sbjct: 221 LERRKKFLTLAKKYDIIIVEDEPY 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,240
Number of Sequences: 5004
Number of extensions: 38286
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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