Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I18
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 206 6e-54
11_01_0155 - 1287003-1287452 206 6e-54
03_06_0097 - 31632238-31632525,31633386-31633769 41 5e-04
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.006
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 31 0.72
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 29 1.7
03_05_0077 - 20547070-20547108,20547407-20547697 29 2.2
11_01_0523 - 4109070-4109984,4110532-4110936 28 5.1
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 5.1
>12_01_0152 - 1168928-1169377
Length = 149
Score = 206 bits (504), Expect = 6e-54
Identities = 91/141 (64%), Positives = 117/141 (82%)
Frame = +3
Query: 21 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 200
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 201 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 380
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 381 PRRCEPKKFGGPGARARYQEN 443
PRRCEPKKFGG GARAR+Q++
Sbjct: 127 PRRCEPKKFGGRGARARFQKS 147
>11_01_0155 - 1287003-1287452
Length = 149
Score = 206 bits (504), Expect = 6e-54
Identities = 91/141 (64%), Positives = 117/141 (82%)
Frame = +3
Query: 21 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 200
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 201 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 380
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 381 PRRCEPKKFGGPGARARYQEN 443
PRRCEPKKFGG GARAR+Q++
Sbjct: 127 PRRCEPKKFGGRGARARFQKS 147
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 41.1 bits (92), Expect = 5e-04
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Frame = +3
Query: 33 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 203
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 204 GVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADP 383
D+ V V GGG Q AI +++AL+ + A+K ++ LL D
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALVK-----ISTANKVTLR------GEGLLTRDT 201
Query: 384 RRCEPKKFGGPGARARYQ 437
R E KK G AR R Q
Sbjct: 202 RIVERKKAGLKKARKRPQ 219
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 37.5 bits (83), Expect = 0.006
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +3
Query: 51 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 230
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 231 GGGHVAQVYAIRQAISKAL 287
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +2
Query: 245 CTGLCNQTSHL*SPYRFLPEICRRSI*EGDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRP 424
CTG+ Q S S Y F +I + + G+ + S K R +++R ++ + RRP
Sbjct: 725 CTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNIRTKKRYFLRRP 784
Query: 425 CQIPGK 442
++P K
Sbjct: 785 VRLPFK 790
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 68 NCGSILQTRTWSVACKWTPPRPGRTQTSS 154
+C S +Q R+ SV W PP G+T+T S
Sbjct: 275 DCVSAMQQRSSSVRLIWGPPGTGKTKTIS 303
>03_05_0077 - 20547070-20547108,20547407-20547697
Length = 109
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 329 GDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRPCQIPGKSYRL 454
GDQR S + +GR L E W+RR C+ RL
Sbjct: 4 GDQRGDSPSSHELSGRLEGILADGEAPWARRACKAAALEVRL 45
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 231 GGGHVAQVYAIRQAISKALIAFY 299
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 114 NGRPLDLVEPRLLQYKLQEPILLL 185
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,048,188
Number of Sequences: 37544
Number of extensions: 349502
Number of successful extensions: 977
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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