Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I18
(514 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 5e-42
SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 5e-04
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36) 33 0.14
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10) 33 0.14
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_30137| Best HMM Match : Phosphodiest (HMM E-Value=0) 29 2.2
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 5.2
SB_37366| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.82) 27 6.9
SB_48620| Best HMM Match : RVT_1 (HMM E-Value=4.3) 27 6.9
SB_21352| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_8194| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42) 27 9.1
SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088) 27 9.1
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06) 27 9.1
>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 167 bits (406), Expect = 5e-42
Identities = 76/95 (80%), Positives = 89/95 (93%)
Frame = +3
Query: 159 KLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 338
K++EPILLLGKE+F GVDIRV VKGGGH +++YAIRQAISK+L+A+YQKYVDE SKKEI+
Sbjct: 11 KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70
Query: 339 DILVQYDRSLLVADPRRCEPKKFGGPGARARYQEN 443
DILVQYDRSLLVADPRR E KKFGGPGAR+RYQ++
Sbjct: 71 DILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKS 105
>SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 41.1 bits (92), Expect = 5e-04
Identities = 34/99 (34%), Positives = 48/99 (48%)
Frame = +3
Query: 51 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 230
G +K + A A+ +G G + VN RP RL Q K Q + D V
Sbjct: 338 GYRKRSVAKAWVMKGSGKITVNDRPFVEYFSRL-QDKQQILFPFQVVDCVGQFDASCHVL 396
Query: 231 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 347
GGG Q AIR AIS+AL+ F + ++ E ++EI + L
Sbjct: 397 GGGLTGQAGAIRLAISRALLNFSEDHL-EPLQEEIPESL 434
>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
Length = 391
Score = 33.1 bits (72), Expect = 0.14
Identities = 27/76 (35%), Positives = 35/76 (46%)
Frame = +3
Query: 210 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 389
DI+V V GGG Q AI+ I++ALI F ++K L + + D R
Sbjct: 323 DIKVNVHGGGESGQAGAIKHGITRALIDF---------NADLKPTLSK--AGFVTRDARE 371
Query: 390 CEPKKFGGPGARARYQ 437
E KK G AR R Q
Sbjct: 372 VERKKCGLRKARRRKQ 387
>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
Length = 119
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 285 LIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 395
++AF QKY+D +KE +Q+ + +LV+ R CE
Sbjct: 53 VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 30.7 bits (66), Expect = 0.74
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +3
Query: 228 KGGGHVAQ--VYAIRQAISKALIAFYQKYV-DEASKKEIKDILVQYDRSLLVADPRRCEP 398
K GGH++Q + I Q K L A + K + DE K++ K+I V+ +RS + ++ EP
Sbjct: 91 KLGGHLSQPKLKKITQVNKKKLRATHHKAILDEIMKEKAKEIDVKKERSTISRRGKKREP 150
Query: 399 K 401
+
Sbjct: 151 E 151
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 477 NDGKLK*YKR*DFPGIWHGRLDHRI 403
N+ LK YK+ DFP WH + + RI
Sbjct: 419 NNSHLKIYKKRDFPDNWHWKNNRRI 443
>SB_30137| Best HMM Match : Phosphodiest (HMM E-Value=0)
Length = 655
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 477 NDGKLK*YKR*DFPGIWHGRLDHRI 403
N+ LK YK+ DFP WH + + RI
Sbjct: 321 NNSHLKIYKKRDFPDNWHWKNNRRI 345
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 5/23 (21%)
Frame = -2
Query: 429 WHGRLDHRISWA-----RNDEGQ 376
WHGRL++R SW+ RND Q
Sbjct: 953 WHGRLNNRYSWSGKPKNRNDRSQ 975
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 483 IPNDGKLK*YKR*DFPGIWHGRLDHRISWARND 385
+PN+ +L+ KR F G W+ + + R W + D
Sbjct: 3013 VPNNARLERPKRGRFAGSWNPKYNRRDQWYQID 3045
>SB_37366| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.82)
Length = 705
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 445 GFSWYLARAPGPPNFLGSQRRGSATSKLL 359
GF W AP P NF +RR AT++ L
Sbjct: 517 GFQWKEEHAPLPTNFSICERRTRATARRL 545
>SB_48620| Best HMM Match : RVT_1 (HMM E-Value=4.3)
Length = 307
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 445 GFSWYLARAPGPPNFLGSQRRGSATSKLL 359
GF W AP P NF +RR AT++ L
Sbjct: 63 GFQWKEEHAPLPTNFSICERRTRATARRL 91
>SB_21352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 445 GFSWYLARAPGPPNFLGSQRRGSATSKLL 359
GF W AP P NF +RR AT++ L
Sbjct: 126 GFQWKEEHAPLPTNFSICERRTRATARRL 154
>SB_8194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 445 GFSWYLARAPGPPNFLGSQRRGSATSKLL 359
GF W AP P NF +RR AT++ L
Sbjct: 34 GFQWKEEHAPLPTNFSICERRTRATARRL 62
>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
Length = 832
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 445 GFSWYLARAPGPPNFLGSQRRGSATSKLL 359
GF W AP P NF +RR AT++ L
Sbjct: 406 GFPWKEEHAPLPTNFSICERRTRATARRL 434
>SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088)
Length = 866
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 445 GFSWYLARAPGPPNFLGSQRRGSATSKLL 359
GF W AP P NF +RR AT++ L
Sbjct: 411 GFPWKEEHAPLPTNFSICERRTRATARRL 439
>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 445 GFSWYLARAPGPPNFLGSQRRGSATSKLL 359
GF W AP P NF +RR AT++ L
Sbjct: 388 GFPWKEEHAPLPTNFSICERRTRATARRL 416
>SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)
Length = 273
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 107 ACKWTPP--RPGRTQTSSVQTTGTYPFARQGKVLWCGY*SDCKRWW 238
+C W P + TQT VQT + R CG DC+RWW
Sbjct: 168 SCSWHAPWDKLTLTQTKGVQTV----YKRN-----CGCRVDCQRWW 204
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,215,378
Number of Sequences: 59808
Number of extensions: 390338
Number of successful extensions: 939
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -