Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I18
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   215   1e-56
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           215   1e-56
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   214   3e-56
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    44   5e-05
At4g35250.1 68417.m05010 vestitone reductase-related low similar...    29   2.4  
At3g24255.1 68416.m03045 expressed protein                             29   2.4  
At3g50430.1 68416.m05516 expressed protein                             28   3.2  
At5g40090.1 68418.m04863 disease resistance protein-related cont...    28   4.2  
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra...    28   4.2  
At2g41680.1 68415.m05149 thioredoxin reductase, putative / NADPH...    27   7.4  
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi...    27   9.8  
At1g43570.1 68414.m05001 hypothetical protein                          27   9.8  
At1g13000.1 68414.m01509 expressed protein contains Pfam profile...    27   9.8  

>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  215 bits (526), Expect = 1e-56
 Identities = 95/143 (66%), Positives = 125/143 (87%)
 Frame = +3

Query: 15  ARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 194
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 195 KFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLV 374
           +F+GV++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 375 ADPRRCEPKKFGGPGARARYQEN 443
           ADPRRCEPKKFGG GAR+RYQ++
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKS 144


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  215 bits (525), Expect = 1e-56
 Identities = 94/143 (65%), Positives = 125/143 (87%)
 Frame = +3

Query: 15  ARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 194
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 195 KFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLV 374
           +F+GV++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 375 ADPRRCEPKKFGGPGARARYQEN 443
           ADPRRCEPKKFGG GAR+RYQ++
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKS 144


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  214 bits (522), Expect = 3e-56
 Identities = 92/137 (67%), Positives = 123/137 (89%)
 Frame = +3

Query: 33  QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 212
           ++VQ FGRKKTATAV YCKRG G++++NG P++L +P +L++K+ EP+LLLGK +F+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 213 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRC 392
           +R+   GGG+ ++VYAIRQ+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 393 EPKKFGGPGARARYQEN 443
           E KKFGGPGARAR+Q++
Sbjct: 128 ESKKFGGPGARARFQKS 144


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 28/79 (35%), Positives = 42/79 (53%)
 Frame = +3

Query: 51  GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 230
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +     DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 231 GGGHVAQVYAIRQAISKAL 287
           GGG   QV AI+  IS+AL
Sbjct: 369 GGGTTGQVGAIQLGISRAL 387


>At4g35250.1 68417.m05010 vestitone reductase-related low similarity
           to vestitone reductase [Medicago sativa subsp. sativa]
           GI:973249
          Length = 395

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 23/94 (24%), Positives = 36/94 (38%)
 Frame = -3

Query: 455 INGRIFLVSGTGAWTTEFLGLATTRVSDQQTSXXXXXXXXXXXLRCFVYIFLVESDKGFR 276
           ING++   +G  AWTT+ +     R++ Q  +            R     F   +D   R
Sbjct: 273 INGKLLTFAGPRAWTTQEVITLCERLAGQDANVTTVPVSVLRVTRQLTRFFQWTNDVADR 332

Query: 275 DGLSDCINLCNMSTTFYSHSNIHTRELFLA*QKD 174
              S+ ++    S T +S     T  L    QKD
Sbjct: 333 LAFSEVLS----SDTVFSAPMTETNSLLGVDQKD 362


>At3g24255.1 68416.m03045 expressed protein
          Length = 836

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -1

Query: 388 RRGSATSKLLSY*TRMSLISFLDASSTYFW*KAIRALEMACL 263
           R G  T++ LS+  R+ LIS +  S T FW  A R L  AC+
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR-LPSACI 182


>At3g50430.1 68416.m05516 expressed protein 
          Length = 642

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 364 VCWSLTLVVASPRNSVVQAPVPDTRKILP 450
           VC S TL V  P      AP P  RK+LP
Sbjct: 553 VCDSWTLFVEFPFEGSTDAPSPKRRKVLP 581


>At5g40090.1 68418.m04863 disease resistance protein-related
           contains Pfam domain, PF00931: NB-ARC domain, a novel
           signalling motif found in plant resistance gene products
          Length = 385

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +3

Query: 186 GKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKE 332
           G+E++    +++  K GGH+ +V+ + +A     +  ++   D   +KE
Sbjct: 310 GREEWVAALLKLKAKQGGHIMEVWKLMEATDDKGLEEWETAADIVERKE 358


>At5g20410.1 68418.m02427 1,2-diacylglycerol
           3-beta-galactosyltransferase, putative /
           monogalactosyldiacylglycerol synthase, putative / MGDG
           synthase, putative identical to
           monogalactosyldiacylglycerol synthase [gi:3367638] from
           Arabidopsis thaliana, similar to MGDG synthase type A
           [gi:9884651] from Glycine max
          Length = 468

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 174 ILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKY 308
           ++ +G E+   V I ++  GGGH A   AIR A     I F  KY
Sbjct: 60  LIQIGAERTKNVLILMSDTGGGHRASAEAIRDAFK---IEFGDKY 101


>At2g41680.1 68415.m05149 thioredoxin reductase, putative /
           NADPH-dependent thioredoxin reductase, putative The last
           2 exons encode thioredoxin. There is an EST match to
           exons 5-7, and the distance between exon 7 and exon 8 is
           only 90bp. It is unlikely this is two separate genes,
           but more likely a hybrid protein.
          Length = 529

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +3

Query: 219 VTVKGGGHVAQVYAIRQAIS-KALIAFYQKYVDEASKK-EIKDILVQYDRSLLVADPRRC 392
           VT  G G +A + A R   S   L+ F+Q   +EA K+   +D+  ++D +L        
Sbjct: 374 VTAAGSGCIAALSAERYLTSNNLLVEFHQPQTEEAKKEFTQRDVQEKFDITL-------- 425

Query: 393 EPKKFGGPGARARYQENPTVYII 461
             K  G    R  Y E+P V ++
Sbjct: 426 -TKHKGQYALRKLYHESPRVILV 447


>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 588

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 171 PILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAIS 278
           P+L L + K S V+ RV V+  GH+A      +A++
Sbjct: 139 PLLELMRRKMSWVEQRVVVRALGHLASYETTFEAVA 174


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 391 QRRGSATSKLLSY*TRMSLISFLDASSTYFW*KAIR 284
           +R  S T + LSY  R+ LI  +  S T FW  A R
Sbjct: 19  KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54


>At1g13000.1 68414.m01509 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 401

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 152 SVQTTGTYPFARQGKVLWCGY*SDCKRWWT 241
           S+ + G+   A+ GK  W G    CKR WT
Sbjct: 349 SLPSLGSQGEAQDGKAGWQGVRDRCKREWT 378


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,596,441
Number of Sequences: 28952
Number of extensions: 267985
Number of successful extensions: 749
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)