Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I17
(558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase, p... 31 0.69
At2g38700.1 68415.m04753 mevalonate diphosphate decarboxylase (M... 30 0.91
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 29 1.6
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 29 1.6
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 29 2.1
At4g10610.1 68417.m01735 RNA-binding protein, putative 28 3.7
At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger) fa... 28 4.9
At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger) fa... 28 4.9
At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger) fa... 28 4.9
At5g16280.1 68418.m01901 expressed protein 27 8.5
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 27 8.5
At3g43850.1 68416.m04691 hypothetical protein similar to MTD1 [M... 27 8.5
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha... 27 8.5
>At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase,
putative similar to mevalonate diphosphate decarboxylase
[Arabidopsis thaliana] gi|2288887|emb|CAA74700
Length = 419
Score = 30.7 bits (66), Expect = 0.69
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 481 SCLVFASNMWLKL---PSRLSGDLCSVCGGSCRRLRGAFVTWT 362
+CLVF+ + + PS LS G +CR L G FV WT
Sbjct: 134 ACLVFSLAKLMNVDEDPSHLSAIARQGSGSACRSLFGGFVKWT 176
>At2g38700.1 68415.m04753 mevalonate diphosphate decarboxylase
(MVD1) identical to mevalonate diphosphate decarboxylase
[Arabidopsis thaliana] gi|2288887|emb|CAA74700
Length = 412
Score = 30.3 bits (65), Expect = 0.91
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -3
Query: 481 SCLVFASNMWLKL---PSRLSGDLCSVCGGSCRRLRGAFVTW 365
+CLVFA + + PS+LS G +CR L G FV W
Sbjct: 134 ACLVFALAKLMNVNEDPSQLSAIARQGSGSACRSLFGGFVKW 175
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +3
Query: 237 HQVENCGAALQGRAYQMQEPGSRNVRHLATLCFEEDRAVTLWVH 368
H E CG G Q+ G+ NV H+ + T W+H
Sbjct: 265 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLH 308
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +3
Query: 237 HQVENCGAALQGRAYQMQEPGSRNVRHLATLCFEEDRAVTLWVH 368
H E CG G Q+ G+ NV H+ + T W+H
Sbjct: 255 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLH 298
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 254 RSSSTRQSIPDAGTRKP*RASPRHSVLRGGSRRHALGPRDERTPQPPAA 400
RS ++ +S AG+R P ++ R S RG R L P P PP A
Sbjct: 508 RSLASSRSARGAGSRAPSSSAKRASGSRGRRPRPPLPPPARARPLPPPA 556
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +3
Query: 138 AVCEGGLYRVKRTGDLKHLLELGCQENIFEDVLHQVENCGAALQGRAYQMQEPGSRNVRH 317
+VC G +YR++ GD H +G E + + NC L G P VR
Sbjct: 269 SVC-GEVYRLRLLGDYHHPTRIGFVEFVMAESAIAALNCSGVLLGSLPIRVSPSKTPVRS 327
Query: 318 LA 323
A
Sbjct: 328 RA 329
>At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger)
family protein contains similarity to autocrine motility
factor receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 577
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 123 YETLTAVCEGGLYRVKRTGDLKHLLELGCQENIFEDVLHQVENC 254
Y+ A+C + + KR HL LGC + + L++V +C
Sbjct: 333 YDDECAICREPMAKAKRL-HCNHLFHLGCLRSWLDQGLNEVYSC 375
>At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 123 YETLTAVCEGGLYRVKRTGDLKHLLELGCQENIFEDVLHQVENC 254
Y+ A+C + + KR HL LGC + + L++V +C
Sbjct: 333 YDDECAICREPMAKAKRL-HCNHLFHLGCLRSWLDQGLNEVYSC 375
>At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 123 YETLTAVCEGGLYRVKRTGDLKHLLELGCQENIFEDVLHQVENC 254
Y+ A+C + + KR HL LGC + + L++V +C
Sbjct: 333 YDDECAICREPMAKAKRL-HCNHLFHLGCLRSWLDQGLNEVYSC 375
>At5g16280.1 68418.m01901 expressed protein
Length = 1265
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 3 VPDNMPLVMSHHATNGSVRFSS 68
VPD +P ++SHH+ + S+R SS
Sbjct: 1080 VPD-LPKILSHHSCHNSIRSSS 1100
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Frame = -1
Query: 285 SGMLCL---VELLRSFRPDVEHPQKYFLD 208
+G++C+ +LLR+FRP +E+ + FLD
Sbjct: 113 NGLICIRIIFDLLRNFRPTLENEVQPFLD 141
>At3g43850.1 68416.m04691 hypothetical protein similar to MTD1
[Medicago truncatula] GI:9294810
Length = 270
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 151 PSQTAVSVSYKGYAKNFPPEQANTNSSPEENLTDP 47
P + A+S YKG +K+F + T+S P ++LT P
Sbjct: 63 PIKRAISKFYKGKSKSF-MSLSETSSLPVKDLTKP 96
>At2g17930.1 68415.m02076 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF02259 FAT domain, PF00454
Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
domain
Length = 3795
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Frame = -1
Query: 285 SGMLCL---VELLRSFRPDVEHPQKYFLD 208
+G++C+ +LLR+FRP +E+ + FLD
Sbjct: 113 NGLICIRIIFDLLRNFRPTLENEVQPFLD 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,629,637
Number of Sequences: 28952
Number of extensions: 271640
Number of successful extensions: 892
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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