Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I16
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    27   1.6  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      26   2.7  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   3.6  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   3.6  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    25   4.8  
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    24   8.4  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    24   8.4  
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    24   8.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    24   8.4  

>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 179 YVAAFLMCQFLWFLRKGPYPYRSVNGTNNH 90
           YV   + C + W L K P+  RS   TN++
Sbjct: 338 YVQRLVRCDYTWHLCKSPFK-RSTGNTNDN 366


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 131 GPYPYRSVNGTNNHGYY*NFRH-HFYLLINMIIKT*KN*VCF 9
           GPY    +   +N GY+ + +H  F  L NM      N +CF
Sbjct: 359 GPYTASQIQAWSNEGYFTDAKHAAFIQLANMDEWMYPNNICF 400


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 300 DEHCHVTEIDPKKP 341
           D H HV E+ PK+P
Sbjct: 210 DRHLHVAEVPPKRP 223


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -2

Query: 206 KRYHIIDFFYVAAFLMCQFLWFLRKGPYPYRSVNGTNNHGYY*NFRHHFYLLINMI 39
           KRY  +  + +   L+C+FL F   G   + S+   +  G++ N+R  ++L +  +
Sbjct: 19  KRYDTLHVWKLIKLLICKFLLFHDFGTALFTSLVKASMLGFH-NWRRTYWLYLKKL 73


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 286 LSLQMTNIAT--SQR*TPRSHILCAVRISNVTQKMTSM 393
           + +++TN+ T  + R   +SH+ C VR+S V  + T +
Sbjct: 286 IHVRITNLPTCFTLRDLRQSHLNCLVRVSGVVTRRTGL 323


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 323 LCDVAMFVICSDNTTRSVINHASSTGN 243
           LCD A  V+C +N  + V N  +  G+
Sbjct: 44  LCDKAREVLCQENNVQPVRNPVTVCGD 70


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 145 GFLGKAPIHTAALTVQTI 92
           G + +AP+HTAAL V+ +
Sbjct: 336 GLIPQAPMHTAALCVKRV 353


>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 240 RITCGGSMIDYASCGVVATNDEHCHVTEIDPKKPYPVCC 356
           + T  G+M  YA   VV++N    H    DPK   P+ C
Sbjct: 108 KCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPLIC 146


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 301 SFVATTPQEA*SIMLPPQVIL*QCPMGLSSVPNGTTSLIS 182
           SF  TTP+   + +  P  +    P+  SSV N +T + S
Sbjct: 359 SFANTTPENTSTQITSPTAVNSSTPITSSSVLNSSTPITS 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,793
Number of Sequences: 5004
Number of extensions: 40913
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)