Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I16
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545...    30   0.87 
11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408...    29   1.5  
07_01_0896 - 7508341-7508715,7511746-7511886                           29   1.5  
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227...    29   2.0  
03_06_0677 + 35476009-35476014,35476974-35477474,35477574-354777...    27   4.6  
09_02_0422 + 9103101-9103106,9103278-9103494,9104473-9104483           27   8.1  
03_06_0636 - 35215034-35215336,35215417-35215584,35215599-352157...    27   8.1  

>02_05_0941 + 32953065-32953089,32954252-32954406,32954486-32954587,
            32955089-32955140,32955237-32955349,32955542-32955610,
            32955942-32956049,32956517-32956661,32957245-32957476,
            32957567-32957853,32957951-32958087,32958520-32958667,
            32959464-32959595,32960239-32960367,32960707-32960834,
            32960911-32961075,32961462-32961587,32962088-32962161,
            32962285-32962534,32962875-32963054,32963128-32963361,
            32964771-32964840,32965065-32965177,32965403-32965511,
            32965639-32965688,32965823-32965889,32966131-32966203,
            32966393-32966448,32966729-32966831,32967377-32967458,
            32967717-32967779,32967918-32967977,32968356-32968448,
            32968561-32968623,32968699-32968797
          Length = 1363

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 205  NGTTSLISFM*QPSLCANSFGFLGKAPIHTAALTVQTIMD 86
            N T  + SF+  P+LCA   G +   P+  AA  ++T+ +
Sbjct: 965  NYTRDVGSFLDHPTLCARCHGVIDLPPVPAAAAGIETLRE 1004


>11_01_0521 +
           4083594-4083763,4083765-4083963,4084059-4084244,
           4085834-4086025,4086979-4087200,4089238-4089444,
           4089681-4090082,4090201-4090230,4090307-4090318
          Length = 539

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 75  ILIISMIVCTVNAAVWIGAFPKKPKELAHKEGCYIKEIN 191
           +L I +IV      VW G+F KKPK L   + C ++E+N
Sbjct: 503 LLAIFLIVVLTMLIVW-GSFVKKPKGL--NDRCLLQEVN 538


>07_01_0896 - 7508341-7508715,7511746-7511886
          Length = 171

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 385 SFSESHLISGQHTGYGFLGSISVTW 311
           +F  S L  GQHT YGF+   + TW
Sbjct: 31  AFGSSILTMGQHTEYGFVPVANPTW 55


>04_03_0812 -
           19922208-19922357,19922448-19922564,19922681-19922752,
           19922864-19923993,19924939-19925008,19925125-19925199
          Length = 537

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +3

Query: 243 ITCGGSMIDYASCGVVATNDEHCHVTEIDPKKPYPVCCPDIKCDSENDIHVV 398
           + CGG+ + Y     +   D      E D + PY +     KC S N +H +
Sbjct: 102 LECGGAYLKY-----IRPQDAAWDAKEFDNETPYTIMFGPDKCGSTNKVHFI 148


>03_06_0677 +
           35476009-35476014,35476974-35477474,35477574-35477762,
           35477925-35477945
          Length = 238

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 164 LMCQFLWFLRKGPYPYRSVNGTNNHG 87
           L  Q+    RKG  P RSVN  N+HG
Sbjct: 21  LYTQYFENARKGKSPGRSVNPNNHHG 46


>09_02_0422 + 9103101-9103106,9103278-9103494,9104473-9104483
          Length = 77

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 308 LPRHRDRPQEAISCVLSGYQM*LRK*HPCRILSYNL 415
           LP+ RDR  EA++ +L   +  +   HP  +L YN+
Sbjct: 18  LPKERDR--EALNMLLEKLKAKIDSLHPMNVLPYNI 51


>03_06_0636 -
           35215034-35215336,35215417-35215584,35215599-35215799,
           35215877-35215962,35216037-35216229,35216304-35216489
          Length = 378

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 284 TTRSVINHASSTGNSVA-MSDGLEFC-SKRYHIIDFF 180
           T  SVI H SST NS A  S+  E C + +  +IDF+
Sbjct: 196 TLYSVITHLSSTQNSPASSSESSENCHAAKAAVIDFY 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,131,009
Number of Sequences: 37544
Number of extensions: 264124
Number of successful extensions: 536
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)