Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I16
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55084| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.89 
SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)                29   1.6  
SB_45602| Best HMM Match : Ribosomal_S30AE (HMM E-Value=8)             27   4.8  
SB_563| Best HMM Match : Ank (HMM E-Value=0)                           27   6.3  
SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.3  
SB_48591| Best HMM Match : Galactosyl_T (HMM E-Value=2.1e-33)          27   8.3  
SB_21236| Best HMM Match : Toxin_8 (HMM E-Value=10)                    27   8.3  

>SB_55084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 326 YLCDVAMFVICSDNTTRSVINHASSTGNSVAMSDGLEFCS 207
           Y  + ++   CS N+T  V N A  + NS +    + FCS
Sbjct: 21  YFSNASLAAFCSTNSTSGVSNIAFCSANSTSGVSNMAFCS 60


>SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)
          Length = 576

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 275 SVINHASSTGNSVAMSDGLEFCSKRYHIID 186
           ++I++ S TGN + +  GL +C K Y++ D
Sbjct: 94  NMISNLSHTGNPIQLPYGLAWCGKYYNMCD 123


>SB_45602| Best HMM Match : Ribosomal_S30AE (HMM E-Value=8)
          Length = 340

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = +3

Query: 294 TNDEHCHVTEID-----PKKPYPVCCPDIKCDSENDI 389
           T D+H  + EI+     P KP+P   PD +C  E ++
Sbjct: 119 TGDQHAFMKEIEERLTWPGKPHPFYYPDAECRVEPEL 155


>SB_563| Best HMM Match : Ank (HMM E-Value=0)
          Length = 753

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = -2

Query: 326 YLCDVAMFVICSDNTTRSVINHASSTGNSVA----MSDGLEFCSKRYHIIDFFYVAAFLM 159
           YL D+   + C D    + +  ASS+G++ +    M  G    +K  H     Y+AA   
Sbjct: 279 YLLDIGANIECKDKDNFTPLLSASSSGHTASIQLLMDRGANLRAKDTHDRTAIYMAAEEN 338

Query: 158 C-QFLWFLRKGPYPYRSVN 105
           C + L  L K P+    VN
Sbjct: 339 CVEALKELLKHPFAKALVN 357


>SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 254 STGNSVAMSDGLEFCSKRYHIIDFFYVAAFLMCQFLW 144
           STGN  A++ G  F  + Y+ +  FY+ A L     W
Sbjct: 41  STGNFSALTVGFRFRREVYYYLFRFYIPASLTVVMSW 77


>SB_48591| Best HMM Match : Galactosyl_T (HMM E-Value=2.1e-33)
          Length = 336

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 335 LGVYLCDVAMFVICSDNTTRSVINH 261
           LG  LCD+  FV   D+ + + INH
Sbjct: 287 LGTVLCDLLSFVCFGDSLSAANINH 311


>SB_21236| Best HMM Match : Toxin_8 (HMM E-Value=10)
          Length = 173

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 281 WCCRYK*RTLPRHRDRPQEAISCVLSGYQM*LRK*HPCR 397
           WC R K     +   RPQ +   V + YQ  +   HPC+
Sbjct: 130 WCYRCKLLAYEKFESRPQTSRKPVENLYQRYILTLHPCK 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,840
Number of Sequences: 59808
Number of extensions: 315230
Number of successful extensions: 648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)