Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I16
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-6|AAA81492.1|  171|Caenorhabditis elegans Hypothetical pr...    30   0.77 
U23411-1|AAC46730.2|  231|Caenorhabditis elegans Hypothetical pr...    30   0.77 
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    29   1.8  

>U40800-6|AAA81492.1|  171|Caenorhabditis elegans Hypothetical
           protein D2096.6 protein.
          Length = 171

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 321 EIDPKKPYPVCCPDIKCDSENDIHV 395
           E DPK+P+P C P   C + N + +
Sbjct: 61  ECDPKRPWPQCPPQSYCYATNSVDI 85


>U23411-1|AAC46730.2|  231|Caenorhabditis elegans Hypothetical
           protein T25E4.1 protein.
          Length = 231

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 321 EIDPKKPYPVCCPDIKCDSENDIHV 395
           E DPK+P+P C P   C + N + +
Sbjct: 120 ECDPKRPWPQCPPQSYCYATNSVDI 144


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 235 ATELPVEEA*LITLLVVLSLQMTNIATSQR*TPRSHILC-AVRISNVTQKMTSMSYLKL 408
           ATEL   E  +  ++   +L ++  AT  R  PR H+   + RI N   ++T++S  KL
Sbjct: 99  ATELGTRERVMAAVMAESALALSINATLGRHVPRVHLFADSSRIDNDLAQLTNLSPYKL 157


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 235 ATELPVEEA*LITLLVVLSLQMTNIATSQR*TPRSHILC-AVRISNVTQKMTSMSYLKL 408
           ATEL   E  +  ++   +L ++  AT  R  PR H+   + RI N   ++T++S  KL
Sbjct: 99  ATELGTRERVMAAVMAESALALSINATLGRHVPRVHLFADSSRIDNDLAQLTNLSPYKL 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,565,669
Number of Sequences: 27780
Number of extensions: 234753
Number of successful extensions: 568
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)