Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I16
         (420 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22080.1 68417.m03193 pectate lyase family protein similar to...    31   0.42 
At4g22090.1 68417.m03194 pectate lyase family protein similar to...    29   1.7  
At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase...    28   3.0  
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu...    27   5.2  
At5g45330.1 68418.m05564 expressed protein ; expression supporte...    27   6.8  
At4g31877.1 68417.m04530 expressed protein                             27   6.8  
At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protei...    26   9.0  
At2g05080.1 68415.m00530 hypothetical protein low similarity to ...    26   9.0  

>At4g22080.1 68417.m03193 pectate lyase family protein similar to
           pectate lyase 2 GP:6606534 from [Musa acuminata]
          Length = 394

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 126 GAFPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYRITCGGSMID--YASCGVVATN 299
           G     P  + H++G    + + +  FG+    I HCY  +C   +ID  +AS G+  +N
Sbjct: 176 GMVRSSPTHVGHRKG---SDGDAIAIFGSSNIWIDHCYLASCTDGLIDVIHASTGITISN 232

Query: 300 D 302
           +
Sbjct: 233 N 233


>At4g22090.1 68417.m03194 pectate lyase family protein similar to
           pectate lyase 2 GP:6606534 from [Musa acuminata]
          Length = 394

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 126 GAFPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYRITCGGSMID--YASCGVVATN 299
           G     P  + H++G    + + +  FG+    I HCY  +C   +ID  +AS  +  +N
Sbjct: 176 GKVRSSPTHVGHRKG---SDGDAITIFGSSNVWIDHCYLASCTDGLIDVIHASTAITISN 232

Query: 300 D 302
           +
Sbjct: 233 N 233


>At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase,
           putative similar to SP|P55250 Fumarate hydratase,
           mitochondrial precursor (EC 4.2.1.2) (Fumarase)
           {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
          Length = 510

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +3

Query: 66  VSKILIIS-MIVCTVNAAVWIGAFPKKPKELAHKEGCYIKEINDVVPFG----TELKPI 227
           +SK+L  S M+V ++N  +         K  AHKEGC +K  N ++ F     +E KPI
Sbjct: 433 ISKLLHESLMLVTSLNPKIGYDNAAAVAKR-AHKEGCTLKVNNKLLTFSSLNKSEFKPI 490


>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to peptidyl-prolyl cis-trans isomerase PPIase
           (cyclophilin, cyclosporin A-binding protein) [Tomato]
           SWISS-PROT:P21568
          Length = 232

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 287 NTTRSVINHASSTGNSVAMSD--GL-EFCSKRYHIIDFFYVAAFLMCQFLWFL 138
           N  + VI   +     V ++D  GL +  S+RY++I+       LMC + WF+
Sbjct: 180 NIEKEVIIKTAKDNKPVVIADCGGLSDDRSERYYLINIVVACMVLMCFWSWFV 232


>At5g45330.1 68418.m05564 expressed protein ; expression supported
           by MPSS
          Length = 571

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 198 VPFGTELKPIGHCYRITCGGSMIDYASCGVVATNDEHCHVTEIDP 332
           VP G   KP+     I  G  +IDY S  ++   D+   V    P
Sbjct: 221 VPLGMMQKPVSSSSTIPNGPQIIDYFSSPIMGLVDDSSQVVTRSP 265


>At4g31877.1 68417.m04530 expressed protein
          Length = 102

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 384 HFLSHI*YPDSTQDMASWGLSL 319
           HFLSH+ +     +M SWG  L
Sbjct: 37  HFLSHVFFISQRYEMLSWGFLL 58


>At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protein
           (LTI65) / desiccation-responsive protein 29B (RD29B)
           nearly identical to SP|Q04980 Low-temperature-induced 65
           kDa protein (Desiccation-responsive protein 29B)
           {Arabidopsis thaliana}
          Length = 619

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 126 GAFPKKPKELAHKEGCYIKEINDVVPFGTELKPI 227
           G    KPK L+H     +    ++VP GT++ P+
Sbjct: 89  GGVTGKPKSLSHAGETNVPASEEIVPPGTKVFPV 122


>At2g05080.1 68415.m00530 hypothetical protein low similarity to
           SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 1238

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 236 AMSDGLEFCSKRYHIIDFFYVAAFLMCQFLWFLRKGPYPYRSVN 105
           A +DG E   K+  + DFF       C+  W + K P  YRS +
Sbjct: 544 ADTDGSE-PKKKNEVEDFFNCRYVSACEAAWRILKYPIHYRSTS 586


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,913,207
Number of Sequences: 28952
Number of extensions: 215075
Number of successful extensions: 436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)