Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I15
(494 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 31 0.095
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 28 0.89
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 27 1.6
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 27 1.6
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 2.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.1
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 27 2.1
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 26 3.6
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 26 3.6
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 4.7
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 4.7
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 4.7
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 4.7
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 25 6.3
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.3
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 8.3
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 25 8.3
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 31.1 bits (67), Expect = 0.095
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +3
Query: 18 VMASKFKSEKVGIVGSGLIGRSWA--MLFASVGYQVTLFDVVEKQITDAIADI 170
V +S FKS K+ IVG+G +G + A +L + + ++ + D+ +K+ D+
Sbjct: 13 VRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDL 65
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 0.89
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = -2
Query: 229 SAFRFPLRSPSFSKVFNCTLISAIASVICFSTTSNKVTW---YPTEANNIAHDLPISPLP 59
SA R P F + + ++S + S S N ++ YP E N ++DLPIS
Sbjct: 361 SAGRTQFGDPDFLPLDHLDVVSKLLSKEFASQIRNNISLSKTYPWEHYNPSYDLPISHGT 420
Query: 58 T-IPTFSDLNLEAMTTRSV 5
T + T NL T +V
Sbjct: 421 THVSTVDSNNLAVSITSTV 439
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 30 KFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFDVV 137
+ + + +GI+G G IG ++L ++G V +D++
Sbjct: 192 EIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYDIL 227
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 42 EKVGIVGSGLIGRSWAMLFASVGYQV 119
++VGI+G G IG+S+A +G ++
Sbjct: 160 KRVGIIGMGAIGKSFAQKILPLGCEI 185
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 264 LAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDN 371
L A + ++ +P + L KK+F+N +NVV+++
Sbjct: 1284 LTYAFNEEKTIRASLPTLICLSKKIFENAENVVENH 1319
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 2.1
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Frame = -2
Query: 367 SSTTLSKFWNTFFLSSKFSGTHSCTKIASLTAIAKSQVPFTHWN---CSSAFRFPLRSPS 197
SST LS + ++ + + + + S TA + S P T N +SA PL S +
Sbjct: 320 SSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVN 379
Query: 196 FSKVFNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNLEAMT 17
+ + T S+ STTS V+ + N + LP S + + P S N T
Sbjct: 380 ST---SATSASSTPLTSANSTTSTSVS-STAPSYNTSSVLPTSSVSSTP-LSSANSTTAT 434
Query: 16 TRS 8
+ S
Sbjct: 435 SAS 437
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 45 KVGIVGSGLIGRSWAMLFASVGYQVTLFD 131
+VGI+G G +GR +A + G++V + D
Sbjct: 6 QVGIIGFGDMGRLYAEYISKAGWRVNVCD 34
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 42 EKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADI-KVQLKTLEKDGL 206
+K+ ++G G+IG +++ +G +VT+ + + ADI K + + K G+
Sbjct: 218 KKMTVLGGGIIGLEMGSVWSRLGAEVTVVEFLPAVGGPMDADISKALSRIISKQGI 273
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 283 SLTAIAKSQVPFTHWNCSSAFRFPLRSPSFSKVFNCTLISA 161
SL A++++ +P +CS F+ S +V C L++A
Sbjct: 9 SLEALSQNLLPGNQNHCSFDFQLKEIDDSIKQVIKCALVAA 49
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.4 bits (53), Expect = 4.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 289 FSYKNASRKIWNSKRKYSKIWTMSSMTTLPYRVQLVQHYRR 411
FS++++SR ++S R YS ++S P R LV++ R
Sbjct: 70 FSHRSSSRDSFSSNRSYSS--SLSRSPEEPLRTILVENLTR 108
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 274 PLRMRFSYKNASRKIWNSKRKYSKIW 351
PL++ F YKN +R+ W S + +W
Sbjct: 394 PLQVAFVYKNLARR-WISLEEIENLW 418
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 4.7
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -2
Query: 208 RSPSFSKVF---NCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPT 47
R+P + K +CT ++ +A + + + + T A D I+P+PT+P+
Sbjct: 127 RNPEYIKGLCYDSCTPLANLAVGLSLNIQEVLIDCFATAACFTTEDTSINPIPTLPS 183
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 4.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 301 NASRKIWNSKRKY 339
NA RK+WN +R+Y
Sbjct: 36 NAIRKLWNERRRY 48
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 6.3
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = -2
Query: 139 STTSNKVTWY-PTEANNIAH--DLPISPLPTIPTFSDLNLE 26
ST+ N+V ++ P + IA D P+S +PT PT S+ +++
Sbjct: 336 STSDNRVMFFLPWQGKVIAGTTDKPLSSVPTNPTPSEDDIQ 376
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 343 WNTFFLSSKFSGTHS 299
WN FFL +KF HS
Sbjct: 364 WNIFFLCTKFWSLHS 378
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 376 VVLSSTTLSKFWNTFF 329
VVL T +K+WN FF
Sbjct: 310 VVLKMCTKTKYWNVFF 325
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 212 P*ESIFL*SFQLHLNISD--CIGNLLLNNIEQSYLVSD 105
P E+I + + L ISD C+G LL I +Y+V +
Sbjct: 735 PIETIGVDKYTTFLFISDKKCVGLLLAERISSAYIVDE 772
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,502
Number of Sequences: 5004
Number of extensions: 41232
Number of successful extensions: 144
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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