Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I15
(494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 53 1e-07
07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166,790... 35 0.041
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397... 33 0.095
11_01_0605 + 4821363-4823246 30 1.2
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600... 30 1.2
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 29 1.6
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 29 2.1
11_01_0606 + 4831102-4833033 29 2.7
06_01_1186 - 10195175-10195621,10195882-10195930,10196019-101961... 28 4.7
03_06_0410 - 33728507-33729415,33729511-33729654,33730054-337309... 28 4.7
04_04_0579 - 26355431-26355684,26355988-26356073,26356292-263563... 27 6.3
01_01_0174 - 1496543-1496596,1496686-1498131,1498928-1499341 27 6.3
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 27 8.3
03_03_0184 + 15228045-15228405,15228725-15228883,15228984-152292... 27 8.3
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 52.8 bits (121), Expect = 1e-07
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Frame = +3
Query: 48 VGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLL--RGNL 221
VG++G+G +G A L A+ G V L D ++ A+ I L+ L G L
Sbjct: 13 VGVIGAGQMGSGIAQLAAAAGCGVLLLDSDTAALSRAVDSISSSLRRLVAKGQLSQASCE 72
Query: 222 NADEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNXXXXXXXXXX 401
++ EQ +CV +L +DA V E + E+ ++KKK+F LD + +
Sbjct: 73 HSIEQIKCVSSVQEL----RDADLVIEAIVESEDIKKKLFVELDKITKPSAILASNTSSI 128
Query: 402 XXXXFSENMKHKAQVIVSH 458
+ QVI H
Sbjct: 129 SITRLASATNRPCQVIGMH 147
>07_01_0935 +
7905748-7905765,7906071-7906096,7906142-7906166,
7906891-7907700,7907803-7907934,7908102-7908470,
7908540-7908671,7909135-7909662
Length = 679
Score = 34.7 bits (76), Expect = 0.041
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = -2
Query: 325 SSKFSGTHSCTKIASLTAIAK-SQVPFTHWNCSSAFRFP-LRSPSFSKVFNCTLISAIAS 152
+S FSG + T +S + +A Q+P + W+ P R FS ++ I
Sbjct: 432 TSTFSGRVTATAWSSTSDLALLRQIPLSVWSSYDYCLLPDQRCSDFSHYLYFNVVGLITR 491
Query: 151 VICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFS 41
C T+ ++W+ + N + D PT TFS
Sbjct: 492 HDCERTSGYAISWWSSYGNCLVLDKRCGVPPTTSTFS 528
>06_01_0558 -
3968211-3969475,3970198-3970266,3970374-3970529,
3971075-3971405
Length = 606
Score = 33.5 bits (73), Expect = 0.095
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 166 SAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNL 29
S + S+I ST + ++W N ++ DLP+ T P S LNL
Sbjct: 355 SFVGSLILPSTVNQNLSWLDASYNRLSGDLPVDINITFPNLSYLNL 400
>11_01_0605 + 4821363-4823246
Length = 627
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 373 VLSSTTLSKFWNTFFLSSKFSGTHSCTKIASLTAIAKSQVP 251
+LSS +K WNT ++SG H C+ +AS + + +P
Sbjct: 51 ILSSVGSTKNWNTCSNPCQWSGVH-CSSVASSAFVTRLSLP 90
>04_04_0590 +
26457514-26457801,26458849-26459325,26459817-26460027,
26460219-26460376,26460461-26460531,26460707-26460812,
26460880-26460966,26461591-26462148,26462245-26462308,
26463352-26463485,26463568-26463621,26464321-26464417,
26465620-26465825,26465901-26465984,26466265-26466330,
26466883-26466956,26467664-26467751,26467830-26467928
Length = 973
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 149 NLLLNNIEQSYLVSD*SEQHSP*SPDQSTPNNSNFFRFKLGSHDDT 12
N+ L N+ + +L SD + + +NSN FR+ GS DDT
Sbjct: 761 NMSLRNLAEKFLTSDPDKMMI--LKENGFSSNSNSFRYSGGSRDDT 804
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 45 KVGIVGSGLIGRSWAMLFASVGYQ-VTLFD 131
++GIVG+G G S A A +GY+ VTLF+
Sbjct: 23 RIGIVGAGPSGLSAAYALAKLGYRNVTLFE 52
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 280 LTAIAKSQVPFTHWNCSSAFRFPLRSPSFSKVFN 179
+ +A S++ HW+ A FP+ PS+ K++N
Sbjct: 188 IDTMAYSKLNVLHWHIVDAQSFPIEIPSYPKLWN 221
>11_01_0606 + 4831102-4833033
Length = 643
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 361 TTLSKFWNTFFLSSKFSGTHSCTKIASLTAIAKSQVP 251
++L+K WNT ++SG H CT AS + + + +P
Sbjct: 61 SSLTKSWNTSSNPCEWSGVH-CTSAASSSFVTRLSLP 96
>06_01_1186 -
10195175-10195621,10195882-10195930,10196019-10196168,
10196513-10196658,10196877-10196914,10197000-10197216,
10197393-10197611,10197753-10197879,10198631-10198812,
10198928-10199131,10199773-10199782,10200789-10200815,
10201072-10201132,10201731-10201851
Length = 665
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 120 TLFDVVEKQITDAIADIKVQ-LKTLEKDGLLRGNLNADEQFQCVKGTCDLAIAVKDAIFV 296
+LFD K++TD +I+V ++ L+K L N + E + +K CD + ++ + V
Sbjct: 348 SLFDEFLKRLTDRAVEIRVSVIEHLKK--CLMSNHSRPEAQEIIKALCDRLLDYEENVSV 405
Query: 297 QECVPENL 320
+ E L
Sbjct: 406 KCYTMERL 413
>03_06_0410 -
33728507-33729415,33729511-33729654,33730054-33730920,
33731371-33731913
Length = 820
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 241 WNCSSAFRFPLRSPSFSKVFNCTLISAIASVICFSTTSN 125
+ CSS R P R PS+S + ++ S CF+TTS+
Sbjct: 586 YTCSSVIRTPRRVPSWSCISRENSTGSL-SEDCFATTSS 623
>04_04_0579 -
26355431-26355684,26355988-26356073,26356292-26356377,
26356596-26356788,26356895-26357094,26359257-26359379
Length = 313
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 250 FTHWNCSSAF-RFPLRSPSFSKVFNCTLISAIASVICFSTTSNKVTWYP 107
F ++ C S + R PL + +N +S ++S+ ++ V WYP
Sbjct: 155 FQYFECDSPYERMPLADKVYELCYNFPPLSYLSSIELSPSSWMSVFWYP 203
>01_01_0174 - 1496543-1496596,1496686-1498131,1498928-1499341
Length = 637
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 187 VFNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLP 59
+ NC S I S IC + ++ W + N+ + P PLP
Sbjct: 42 ILNCKSDSLIPSYICSVISKSRWGWASDDPNDDEYTPPDHPLP 84
>05_05_0195 +
23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 324 VPNFPGRILVRKSHP*RQSLNHRYLSHIGTVHPHLDFPLGVH 199
+ NF G +V+ S + LN + H+G++H +L+ + VH
Sbjct: 349 INNF-GSSVVKFSRS-QAKLNSEIVKHLGSIHEYLEMMISVH 388
>03_03_0184 +
15228045-15228405,15228725-15228883,15228984-15229258,
15229346-15229594,15229670-15229788,15229874-15229972,
15230068-15230176,15230281-15230421
Length = 503
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 38 IGKSWNCWEWTDREIMGYVVRFSRIPSNFVR 130
I SW W D E+ GYVV + + VR
Sbjct: 444 INSSWRPWYSDDNEVAGYVVGYKGLVFATVR 474
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,651,176
Number of Sequences: 37544
Number of extensions: 245101
Number of successful extensions: 649
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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