Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I15
         (494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)               44   9e-05
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)                       32   0.23 
SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)                   31   0.69 
SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7)            31   0.69 
SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.91 
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_58552| Best HMM Match : UbiD (HMM E-Value=1.1)                      28   4.9  
SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011)                   27   6.4  
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011)                   27   6.4  
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)             27   8.5  
SB_38953| Best HMM Match : 7tm_1 (HMM E-Value=1.4)                     27   8.5  
SB_15525| Best HMM Match : Galactosyl_T (HMM E-Value=1.1e-31)          27   8.5  
SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)                   27   8.5  

>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
          Length = 120

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 300 ECVPENLELKKKVFQNLDNVVDDNXXXXXXXXX-XXXXXFSENMKHKAQVIVSH 458
           EC PENLELKKKVFQNL+  +  +               F+E+++ + + IV+H
Sbjct: 1   ECTPENLELKKKVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAH 54


>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 812

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
 Frame = +3

Query: 48  VGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNLNA 227
           V ++G+GL+G   A   A  G +V L+D    Q  +   ++ +Q    +K+ L R  + A
Sbjct: 8   VAVIGAGLMGTCIAGELAYHGARVNLYD-RSAQAMEKSKEMLIQ----QKEQLKREEVMA 62

Query: 228 DEQFQCVKGTCD-LAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDN 371
              F      C+ L  AV ++  + E   ENLE+KK VF+++      N
Sbjct: 63  TSDFIGTVAFCESLEEAVVNSGLIFEATIENLEVKKSVFKSISQFCRTN 111


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 204 LLRGNLNADEQFQ--CVKGTCDLAIAVKDAIFVQECVPENL 320
           LLR   + DE  +  C++  CD+A+ V D  F+ +CV ++L
Sbjct: 806 LLRDTNDTDECMKECCLRDECDVAVMVSDYCFMADCVSDSL 846


>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
          Length = 485

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 45  KVGIVGSGLIGRSWAMLFASVGYQVTLFD 131
           +V IVG GL+G   A+ FA  GY+V L++
Sbjct: 165 EVAIVGGGLVGALSAVFFAKRGYKVDLYE 193


>SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)
          Length = 456

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +3

Query: 21  MASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTL 125
           ++S F  ++V ++G+G+IG + A    + GY+VT+
Sbjct: 13  LSSPFGGQRVLVIGAGVIGLTTAYELLTAGYEVTV 47


>SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7)
          Length = 210

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 133 TSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNL 29
           TS K +WYP   N    D+P+S LP+I   S + L
Sbjct: 55  TSEKNSWYPNPEN----DIPLSTLPSIQPLSKVKL 85


>SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 45  KVGIVGSGLIGRSWAMLFASVGYQVTLFDVVE 140
           KVGIVGSG+ G S A L    G +V L++  E
Sbjct: 2   KVGIVGSGIAGLSAAWLLTLRGNEVHLYEKQE 33


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
 Frame = +3

Query: 102  SVGYQVTLFDVVEKQITDAIADIK-VQLKTLEKDGLLRGNLNADE--------------Q 236
            S  Y   +  V  +++ +A+   K  Q   +E D  L+G +NA +              Q
Sbjct: 1981 SAFYNPKIAFVTHRKVFEAVISHKRCQSSVIENDVTLQGGINAGKFTDLGQMTDMQECVQ 2040

Query: 237  FQCVKGTCDLAIAVKDAIFVQECVPENL 320
              C K TCD+A  ++D  +   C+   L
Sbjct: 2041 RCCAKSTCDVAFMLEDECYGVSCISNTL 2068


>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 36  KSEKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEK 143
           KS KV IVGSG+ G   A    S G  VT+ +  E+
Sbjct: 249 KSPKVIIVGSGIAGLMAARQLQSFGIDVTMVEARER 284


>SB_58552| Best HMM Match : UbiD (HMM E-Value=1.1)
          Length = 409

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 26/106 (24%), Positives = 51/106 (48%)
 Frame = +3

Query: 48  VGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNLNA 227
           VG+VG+G++ R      A     + L +  +  I++ ++      K L+ DG +     +
Sbjct: 288 VGVVGAGVVSRGLTGKVAKHEDTMVLAESKKNSISELVS------KALQ-DGRI-----S 335

Query: 228 DEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVD 365
           DE+F+ +    +    +KDAI  +  +  + +L   V  +L N+VD
Sbjct: 336 DEEFRLILQEQERYNTLKDAIRARHGLAPHYDLPNIVDYDLPNIVD 381


>SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 246 VKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLD 353
           +K + D+  +V DA  V E + ENL  K K+F  LD
Sbjct: 13  LKISLDVPGSVADADLVIEAIVENLRTKHKLFTALD 48


>SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011)
          Length = 323

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 243 CVKGTCDLAIAVKDAIFVQECVPENL 320
           C + TCD+A  +KD  +  EC  + L
Sbjct: 176 CDRDTCDVAFYLKDTCYSVECYADEL 201


>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1810

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -2

Query: 223 FRFPLRSPSFSKVFNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTF 44
           + FPL      KV + +  S+IAS +  S  S    W P+ A    + L +SP+   P  
Sbjct: 672 YPFPLEPGWGLKVVSASSSSSIASSVPSSMYSGPTPWIPSSA--ARYTLAVSPMLQSPRS 729

Query: 43  S 41
           S
Sbjct: 730 S 730


>SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011)
          Length = 353

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 243 CVKGTCDLAIAVKDAIFVQECVPENL 320
           C + TCD+A  +KD  +  EC  + L
Sbjct: 187 CDRDTCDVAFYLKDTCYSVECYADEL 212


>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
          Length = 451

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
 Frame = +3

Query: 60  GSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAI-ADIKVQLKTLEKDGLLRGNLNADEQ 236
           G+G +G S   +    GY+VT++D     I+         +L+ +  D L  G+L+    
Sbjct: 148 GAGYLGSSLVPILLDQGYKVTVYDRFLWGISSLYPCASNPRLQIINGDILDVGHLS---- 203

Query: 237 FQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVD 365
            QC+   CD  I +   +    C  +  +  +   Q   NVVD
Sbjct: 204 -QCI-SECDAVIHLASIVGYPACEKDPQKATEVNEQGTRNVVD 244


>SB_38953| Best HMM Match : 7tm_1 (HMM E-Value=1.4)
          Length = 324

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 11  ACRHGFQV*IGKSWNCWEWTDREIMGY--VVRFSRIPSNFVRC 133
           AC H F   +G S   W+W  R+ +GY  V+R     S   RC
Sbjct: 11  ACHHFFHFFVGASGARWQWL-RQCVGYTSVLRMLVSVSGARRC 52


>SB_15525| Best HMM Match : Galactosyl_T (HMM E-Value=1.1e-31)
          Length = 522

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 298 KNASRKIWNSKRKYSKIWTMSSMTTLPYRVQLVQHYRRCFL 420
           +NA RK W +KR  +  + + +    P++V + + +R  FL
Sbjct: 200 RNAIRKTWANKRVQTDGFGLGAKHGFPFKVPVGRSFRLVFL 240


>SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)
          Length = 334

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 109 PTEANNIAHDLPISPLPTIPT-FSDLNLEA 23
           PT  + + H  P  PLP IPT  S ++L+A
Sbjct: 82  PTSPSLVYHSYPYKPLPRIPTSLSLVSLQA 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,054,860
Number of Sequences: 59808
Number of extensions: 304370
Number of successful extensions: 835
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)