Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I14
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0140 + 12700740-12700935,12701082-12701515                       28   6.3  
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22...    27   8.4  
03_03_0243 - 15769102-15769106,15769820-15769950,15770025-15770338     27   8.4  
01_06_1608 - 38612754-38616947,38617030-38617095                       27   8.4  

>09_03_0140 + 12700740-12700935,12701082-12701515
          Length = 209

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 491 IPLRRRSAQRRAATWPSSIVKQK 423
           +P RRR  QRR A   +S+V+Q+
Sbjct: 104 LPCRRRGGQRRVAVVEASVVRQR 126


>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
            225296-225356,225666-226918
          Length = 1891

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 519  YKFHSVGRPYSVAAAICSAEGGHLAII 439
            Y F+  G P  +AA +CS +G HLA++
Sbjct: 1349 YPFNPNGSPLGIAA-LCSPDGRHLAMM 1374


>03_03_0243 - 15769102-15769106,15769820-15769950,15770025-15770338
          Length = 149

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 355 YNIKRDGEGLSGMLCEQVPQDLGFCFTIDDGQVAALR*ADRRRNGIRSSYAMK-LVTLVS 531
           +N   DG  +SG+   +  +  GF F+     + AL  AD+ RNG    + ++ LVT   
Sbjct: 37  FNTNNDGR-ISGVELREAIRSKGFGFSAWWKSIVALHQADKDRNGYIDEFEIENLVTFAQ 95

Query: 532 PLV 540
            ++
Sbjct: 96  KVL 98


>01_06_1608 - 38612754-38616947,38617030-38617095
          Length = 1419

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 519  YKFHSVGRPYSVAAAICSAEGGHLAII 439
            Y F+  G P  +AA +CS +G HLA++
Sbjct: 1353 YPFNPNGSPLGIAA-LCSPDGRHLAMM 1378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,226,270
Number of Sequences: 37544
Number of extensions: 282921
Number of successful extensions: 705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)