Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I13
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    26   2.0  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   3.5  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   3.5  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.1  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    24   8.0  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.0  

>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 343 VQDNTHRA-PNSKDSHINHNPRSRMKNTGPFFCCTPF 236
           ++D  ++   N KD   +H P+S  + TGP F C  F
Sbjct: 4   IKDEAYKTYQNVKDEISSHLPQSAPEPTGPPFKCAIF 40


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 51  KVESVNNIFSFFYHLTPFCNTIWCFLLKSCFT 146
           KVE  N + +FF++ TP     +  L  +CFT
Sbjct: 321 KVEDQNRVNNFFHYSTPKDPIPFVKLFVNCFT 352


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 359 FGHKQGTRQHAPSAKQQGFT 300
           F  + GTR H+PS    GF+
Sbjct: 706 FSRQNGTRSHSPSVSPVGFS 725


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 315 FGARCVLSCTLLVPERMRSTAT 380
           FGA C+L C +L P  +   AT
Sbjct: 96  FGALCILGCLVLFPILLPVNAT 117


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 95  NTILQYNLVFPIKILFYSVRFKCVFNFYSH*FNCNNSFKKAVDFFKLKRSTTKE 256
           N +  +N +FP+ +L    R    F   S  +   NSFK  V      +STT +
Sbjct: 8   NHLRTHNGIFPVSLLSTQARQLLNFKLKSPSYYLLNSFKLLVKSEGNNQSTTAD 61


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +1

Query: 286 DCDLCVNPCCLALGACCLVPCLCPNACGQQQQPPQT 393
           DC L ++  C+ L     +P  CP       Q P T
Sbjct: 253 DCALTLSFICIFLAQYTSIPLPCPLQLPSPDQKPMT 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,864
Number of Sequences: 5004
Number of extensions: 35073
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)