Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I13
(412 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0413 + 22681957-22682035,22682253-22682788 31 0.27
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 31 0.47
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138 29 1.1
11_01_0474 - 3666236-3668050 29 1.4
09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919... 29 1.4
02_03_0334 + 17855027-17855029,17855733-17855804,17856040-178561... 28 2.5
08_02_0611 + 19317969-19318778 28 3.3
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 28 3.3
01_03_0184 + 13560830-13562981,13563604-13564088 28 3.3
10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131 27 4.4
02_05_0166 + 26412217-26413403,26413918-26414800 27 5.8
11_06_0564 - 25022353-25022546,25022654-25022894,25022936-250230... 27 7.7
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 31.5 bits (68), Expect = 0.27
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +1
Query: 298 CVNP-CCLALGACCLVPCLCPNACGQQQQPPQ-TIHVHHP 411
CV+P CC + CC C CG Q PP + HHP
Sbjct: 102 CVHPPCCESAAGCCCNGC-SGGGCGGGQCPPSPSCENHHP 140
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 30.7 bits (66), Expect = 0.47
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Frame = +1
Query: 280 CGDCDLCVNPC-CLALGACCLVPCLCPNAC 366
CG C C CL G CC C CP C
Sbjct: 651 CGCQSACGKQCPCLTNGTCCEKYCGCPKMC 680
>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
Length = 244
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 247 NKRMGLCFSFDCGDCDLCVNPCCLAL-GACCLVPCLCPNA-CG 369
+K+ + D DC +C P + AC PC CP++ CG
Sbjct: 35 DKKQVVTIGMDVLDCPVCFEPFKPPIFQACSYEPCFCPDSGCG 77
>11_01_0474 - 3666236-3668050
Length = 604
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 271 SFDCGDCDLCVNPCCLALGACCLVPCLCPNACG 369
S D GD D NPC A G+C C N+ G
Sbjct: 35 SDDQGDRDDSSNPCSAAGGSCAETEASCRNSAG 67
>09_04_0588 -
18789971-18790000,18790334-18790507,18791470-18791954,
18792912-18793266
Length = 347
Score = 29.1 bits (62), Expect = 1.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 268 FSFDCGDCDLCVNPCCLAL 324
FSF C C ++PCC A+
Sbjct: 136 FSFRCTSCSFAMHPCCAAM 154
>02_03_0334 +
17855027-17855029,17855733-17855804,17856040-17856124,
17856129-17856223
Length = 84
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 325 GACCLVPCLCPNACGQQQQP 384
G CC V C CP GQ QP
Sbjct: 40 GCCCNVICNCPWTFGQPSQP 59
>08_02_0611 + 19317969-19318778
Length = 269
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 268 FSFDCGDCDLCVNPCCLAL 324
F F C D DL ++PCC +L
Sbjct: 105 FVFHCADRDLDLHPCCASL 123
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 280 CGDCDLCVNPC-CLALGACCLVPCLCPNAC 366
CG +C C C+ G CC C C +C
Sbjct: 454 CGCQQMCGKDCACVENGTCCEKYCGCSKSC 483
>01_03_0184 + 13560830-13562981,13563604-13564088
Length = 878
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +3
Query: 84 FYH--LTPFCNTIWCFLLKSCFTVFVSNVCLIFIVTNLI 194
FYH L C+ W F+L F+ F C +FI I
Sbjct: 339 FYHSSLPVSCSVFWLFVLNILFS-FAGTACCLFIAIRTI 376
>10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131
Length = 190
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 327 CVLSCTLLVPERMRSTATAAAND 395
C+LS L P+ + +TA AAAND
Sbjct: 83 CILSADPLSPDVVAATAAAAAND 105
>02_05_0166 + 26412217-26413403,26413918-26414800
Length = 689
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 298 CVNPCCLALGACCLVP-CLCPNACGQQQQ 381
CV P C+ + C+ P C P GQ+ +
Sbjct: 467 CVQPACMEPSSVCIQPACFMPKLFGQRSK 495
>11_06_0564 -
25022353-25022546,25022654-25022894,25022936-25023041,
25023341-25023565,25023704-25023793,25025001-25025120,
25025210-25025356,25026282-25026490
Length = 443
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 214 SC*LFQVKKEYNKRMGLCF---SFDCGDCDLCVNPCCLAL 324
+C +VK+ Y K+ LC+ S D G C C N +AL
Sbjct: 354 TCYFAEVKQVYGKKFYLCWPVKSHDDGYCHGCANQGMVAL 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,916,768
Number of Sequences: 37544
Number of extensions: 209584
Number of successful extensions: 592
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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