Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I13
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   0.58 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   4.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   4.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 36  LTIYQKVESVNNIFSFFYHLTPFCNTIWCFLLKSCFTV 149
           +TI +K  S ++    F  L PF NT+W  ++ S   V
Sbjct: 544 ITILEKKPSRSSTLVSF--LQPFSNTLWILVMVSVHVV 579


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -1

Query: 358 SGTSRVQDNTHRAPNSKDSHINHNPRSRMKNTGPFFCCT 242
           S  +   +N +   N  + + N N  S   N G  FC T
Sbjct: 238 SNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGDMFCHT 276


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 326  PSAKQQGFTHKSQSPQSNEKHRP 258
            P+  QQG       PQS E ++P
Sbjct: 1002 PANAQQGQAQAQAKPQSQEANKP 1024


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 274 FDCGDCDLCVNPCCLAL 324
           F  G C+  +NPC  AL
Sbjct: 48  FWLGYCNSAINPCIYAL 64


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 274 FDCGDCDLCVNPCCLAL 324
           F  G C+  +NPC  AL
Sbjct: 496 FWLGYCNSAINPCIYAL 512


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,375
Number of Sequences: 438
Number of extensions: 2747
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)