Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I11
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   0.82 
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    26   2.5  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    26   2.5  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   2.5  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   3.3  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   4.4  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   5.8  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   5.8  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   5.8  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   5.8  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   5.8  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    24   7.7  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    24   7.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   7.7  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    24   7.7  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    24   7.7  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    24   7.7  

>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +1

Query: 28  PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 177
           P  F ++D L  +YR+K +D   HD K+    ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 40  VNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTY 210
           +NMD LL  Y TK  D      + +NY ++     Y  + N  ++F+   +++RL +
Sbjct: 289 MNMDILLDSYLTKAMDIHATFIQKLNYDLI--NLLYEPFHNIYSSFIKPIDDRRLEF 343


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 49  DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYANYS 168
           D  + I R K   G + HD   +NY ++   E++ +  N S
Sbjct: 83  DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -1

Query: 186 IVKESVGIVG-VIHI-LLFLFYNSIINSLCIVKN 91
           + KE   I+  +++I ++FLF N +++ +C VKN
Sbjct: 22  VAKEKYKIIHRLLYISIIFLFLNYVVDIVCYVKN 55


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 138 FLFYNSIIN-SLCIVKNTVLHFSAINLK*SVHINEE 34
           FLF N   N SLC  ++T   F  +    S+HI  E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 328 NFYQQLTTRYYFERLTNGLGSIPEF 402
           NFY  +    YF   T G+ S+P F
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYF 150


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 184 NNEEQRLTYLTEDIGFNSYYYYFHSHL 264
           + + Q++ Y+ ++   NSY  Y HSH+
Sbjct: 313 SRKTQKIHYINDNDPSNSYSSYQHSHV 339


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 117 LWNCKRGRAVCVLRQLFQH 173
           +WN + G  +C  R+ +QH
Sbjct: 202 IWNSETGEKICEFRRGYQH 220


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 82  QDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEE 195
           Q+ ++   + + +G+V  E ++V     S TFL +NE+
Sbjct: 128 QNILVQVCQPVRHGVVDSETKFVIERKDSFTFLASNEK 165


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 142 QYVYYANYSNTFLYNNEEQRLT--YLTEDIGFNSYYYYFHSHLPFWWSSERY 291
           Q  ++   SN  +  N    L+  Y+T D GF S Y Y  S   +  S E +
Sbjct: 265 QNTFFNGKSNPTIDPNSSSLLSEKYITLDKGFPSKYIYSRSLFEYQLSDEDF 316


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/51 (19%), Positives = 24/51 (47%)
 Frame = +1

Query: 76  KMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIG 228
           K  D  L  A+ +      + E Y  + NY + ++  +++   ++  +D+G
Sbjct: 346 KGNDFSLEAAQVLERLSKSDSEAYARFKNYKSAYIPKSDKNENSFFKKDVG 396


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 217 EDIGFNSYYYYFHSHLPFWWSSERYG 294
           +DIG  +Y       L F W S+R+G
Sbjct: 118 QDIGMIAYVGTIVGQLSFGWYSDRFG 143


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 271 WWSSERYGNLKHRRGEIYYNFYQQL--TTRYYFER 369
           +WS+    N K  R E Y NF++ +  T  ++ ER
Sbjct: 282 FWSNFEIANFKFFRNEQYENFFRTMDATGGFWTER 316


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 244  YYFHSHLPFWWSSERY 291
            Y    + PFWW+S+R+
Sbjct: 1469 YQLLKNNPFWWTSQRH 1484


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 187 NEEQRLTYLTEDIGF-NSYYYYFHSHLPFWWSSE 285
           N + +  YLT D+ +  S YYY    L F +++E
Sbjct: 256 NGQNQSVYLTYDVPYGRSLYYYTSCALEFRFTNE 289


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
            family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 364  RSNNVLLIVGRNCNIFRHG 308
            R+N+ L+I G  C +FR G
Sbjct: 963  RNNDFLIIYGIGCEVFRLG 981


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 259 HLPFWWSSERYGNLKHRRGEIYYNFYQ 339
           H  FWWS  +  NL     E+  + +Q
Sbjct: 118 HQKFWWSLRKKRNLPKENSELDLSNFQ 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,033
Number of Sequences: 5004
Number of extensions: 32761
Number of successful extensions: 107
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)