Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I11
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0914 + 9010613-9013316,9013537-9013748                           28   2.4  
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    28   3.2  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    28   3.2  
01_06_0693 - 31280108-31281271                                         28   3.2  
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425...    27   7.3  
08_02_0484 + 17665714-17666877                                         26   9.7  
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92...    26   9.7  

>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -1

Query: 153 IHILLFLFYNSIINSLCIVKNTVLHFSAINLK*SVHINEELWIN 22
           +H+L+F    ++I+S+C +  T   F    +K +V  NE L++N
Sbjct: 656 LHVLIFCIVGTLISSMCCM--TAYCFIKRKMKLNVVDNENLFLN 697


>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 70  RTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEE--QRLTYLTEDIGFN 234
           R   Q G + D   I YGI     +++Y+   S+  +  NE+     T  +ED+G N
Sbjct: 284 RIHRQKGHVEDHLYI-YGIASTYTRWIYHGEQSDAGINENEDHLDEHTSFSEDVGIN 339


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 193 EQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKH 306
           E+ + +    IG   Y  Y   + PF       GNLKH
Sbjct: 281 EESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKH 318


>01_06_0693 - 31280108-31281271
          Length = 387

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +1

Query: 37  FVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF-----LYNNEEQR 201
           ++ MDT+  ++R  +++G+  D +A+N  +VK   Q ++  +    F     +Y  E   
Sbjct: 196 YMYMDTVSALFRQMLEEGVPPDTRALNV-LVKGYAQSLHLNDALRVFHQMRPVYGCEPDA 254

Query: 202 LTY 210
           LTY
Sbjct: 255 LTY 257


>06_03_0791 -
           24641350-24641418,24641684-24641965,24642318-24642537,
           24642657-24642776,24643056-24643132,24643220-24643339,
           24644121-24644186,24644265-24644479,24645450-24645582,
           24646562-24646708,24647301-24647596,24648222-24648319,
           24648425-24648471,24649340-24649449,24649663-24649735,
           24650795-24650899
          Length = 725

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 163 YSNTFLYNNEEQRLTYLTEDI 225
           YS    + NEE RL+YL +D+
Sbjct: 465 YSTVLYHLNEEMRLSYLAQDL 485


>08_02_0484 + 17665714-17666877
          Length = 387

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 196 VLHYCKGKCWNSWRNTHTALPLLQ 125
           +LH   G+ W+  R  H ALPL++
Sbjct: 263 LLHLLTGRQWDGGRLAHWALPLIR 286


>02_01_0125 +
           920128-920392,920491-921839,921921-922084,922340-922370,
           922534-922565,922730-923060,923210-923713
          Length = 891

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 131 KRKSSMCITPTIPTLSFTIMKNRG 202
           K+K S+ +TPT P  +FT ++  G
Sbjct: 855 KKKRSLSLTPTTPLSNFTALEIEG 878


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,163,909
Number of Sequences: 37544
Number of extensions: 183667
Number of successful extensions: 439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)