Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I11
         (402 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote...    32   0.16 
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    31   0.22 
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00...    31   0.29 
At5g13700.1 68418.m01595 polyamine oxidase, putative similar to ...    28   2.7  
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa...    27   4.7  
At5g38670.1 68418.m04676 F-box family protein similar to SKP1 in...    26   8.2  
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea...    26   8.2  
At3g13065.1 68416.m01632 leucine-rich repeat transmembrane prote...    26   8.2  

>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor-like
           protein kinase
          Length = 680

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
 Frame = +1

Query: 154 YANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERY---GNLKHRR--GE 318
           Y + SN FL+ +   +L+ + +   F   + +F+  LP W+ S  Y    + K  +  GE
Sbjct: 145 YLDLSNNFLFGSVPPKLSTMVKLETFRFDHNFFNGTLPSWFDSYWYLKVLSFKSNKLSGE 204

Query: 319 IYYNFYQQLTTRYYFERLTNGLGSIPE 399
           ++ +     T  Y   R  +  GS+P+
Sbjct: 205 LHSSLLSLSTIEYIDLRANSLSGSLPD 231


>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 98  TMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 193
           T+QR+ + E+ K+    C++P +PT +FT  K
Sbjct: 522 TLQRINLGEILKKSLGSCVSPLLPTKNFTYTK 553


>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 568

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 59  LRFIALKCKTVFFTMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 193
           L F+  + K V  T+QRL + E+ K+    C+ P  P+ +FT M+
Sbjct: 507 LAFVWKETKVVI-TLQRLNLTEILKKGLGSCVPPLPPSKNFTYMR 550


>At5g13700.1 68418.m01595 polyamine oxidase, putative similar to
           SP|O64411 Polyamine oxidase precursor (EC 1.5.3.11) from
           Zea mays
          Length = 472

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 16  YEVYPQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANY 165
           Y++  +F V     +  YR K+   +    ++ N  +VK E+  VY ANY
Sbjct: 188 YKMAEEFLVTSHGNILDYRLKLNQVVREVQQSRNGVVVKTEDGSVYEANY 237


>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 248

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -3

Query: 211 GRSTSVLHYCKGKCWNSWRNTHTALPLLQF 122
           G+    LH     C  SW N H   P+ +F
Sbjct: 151 GKELKCLHLYHSSCIVSWLNIHNTCPICRF 180


>At5g38670.1 68418.m04676 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 291

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 115 NYGIVKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWW 276
           +Y IV+ + + ++  +Y     YN++E R   +T  I  N Y Y  + ++   W
Sbjct: 132 HYKIVRFDGK-LHLVSYKGVDAYNSKEGRWDLVTPSIEHNKYLYDCYRNIGNVW 184


>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
            family protein contains 5 WD-40 repeats (PF00400);
            related to TGF-beta resistance-associated  protein TRAG
            (GI:15624071) {Mus musculus};  similar to beta-transducin
            repeats containing protein - Homo sapiens,PID:e1284220;
            3' EST no_NP:TC8031
          Length = 1446

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 28   PQFFVNMDTLLKIYRTKMQDGILHDAKAINY 120
            P   V++ TL++I R   ++ +LH  KA+N+
Sbjct: 1195 PVHVVSLRTLIRIIRAAPRNLVLHLEKAVNF 1225


>At3g13065.1 68416.m01632 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich repeat transmembrane
           protein kinase 1 GB:AAC27894 from [Zea mays]
          Length = 646

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +1

Query: 28  PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKE--EEQYVYYANYSNTFLYNNEEQR 201
           P   +   T+ ++Y+ K QDG     K I+  ++ +   E++ +  +  ++  + N  + 
Sbjct: 376 PNRLLGEGTIGRVYKAKFQDGRKFAVKEIDSSLLGKGNPEEFSHIVSSISSIHHKNMAEL 435

Query: 202 LTYLTEDIGFNSYYYYFHS 258
           + Y +E       Y YF S
Sbjct: 436 VGYCSEQGRNMLVYEYFTS 454


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,428,558
Number of Sequences: 28952
Number of extensions: 159429
Number of successful extensions: 465
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)