Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I08
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...   161   2e-41
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...   160   8e-41
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    28   0.55 
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    27   1.3  
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    27   1.3  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   2.9  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   2.9  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    25   2.9  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.8  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    24   6.8  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    24   9.0  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    24   9.0  

>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score =  161 bits (392), Expect = 2e-41
 Identities = 73/122 (59%), Positives = 94/122 (77%)
 Frame = +2

Query: 8   EVSQYGRTKAKISLSVIDRLRNKRSGKYIVVAGITPTPLGEGKSTTLIGLVQALCARRGR 187
           E+  YG  KAK++L+V +RL++++ G Y+VV+GITPTP GEGKST + GLVQA+    G+
Sbjct: 366 ELENYGNYKAKVNLAVYERLKHRKDGNYVVVSGITPTPFGEGKSTVVAGLVQAM-GHLGK 424

Query: 188 NAFACMRQPSQGPTFGVKXXXXXXXYSQVIPMEEFNLHMTGDIHAVTAANNLLAAQMDAR 367
              AC+RQPSQGPTFGVK       Y+Q IPM++FNLHMTGDIHAVTAANNLL A ++ R
Sbjct: 425 LGIACVRQPSQGPTFGVKGGAAGGGYAQFIPMDDFNLHMTGDIHAVTAANNLLVAALETR 484

Query: 368 IF 373
           +F
Sbjct: 485 MF 486


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score =  160 bits (388), Expect = 8e-41
 Identities = 75/123 (60%), Positives = 92/123 (74%)
 Frame = +2

Query: 5   NEVSQYGRTKAKISLSVIDRLRNKRSGKYIVVAGITPTPLGEGKSTTLIGLVQALCARRG 184
           +E+  YG  KAK++L ++ RL ++R G Y+VV GITPTP GEGKST   GLVQAL +   
Sbjct: 337 SELEFYGSHKAKVNLEILQRLAHRRDGHYVVVTGITPTPFGEGKSTLTAGLVQAL-SNLD 395

Query: 185 RNAFACMRQPSQGPTFGVKXXXXXXXYSQVIPMEEFNLHMTGDIHAVTAANNLLAAQMDA 364
           + A AC+RQPSQGPTFG+K       YSQ IPMEEFNLH+TGDIHA+TAA NLLAA +D 
Sbjct: 396 KLAIACVRQPSQGPTFGIKGGAAGGGYSQFIPMEEFNLHLTGDIHAITAATNLLAAAIDT 455

Query: 365 RIF 373
           R+F
Sbjct: 456 RMF 458


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 27.9 bits (59), Expect = 0.55
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 14  SQYGRTKAKISLSVIDRLRNKRSGKYIVVA 103
           + Y R   K ++SVI  L NK +G  ++VA
Sbjct: 465 NMYNRVMTKDNISVITLLENKENGSRLIVA 494


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -2

Query: 173 HTELAPNQLKWYFYLLPAVL-VLYLRRQC-ICR-CACYG 66
           H ELAP    WY+    A+   +YLR+Q  + R C  YG
Sbjct: 42  HKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYG 80


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -2

Query: 173 HTELAPNQLKWYFYLLPAVL-VLYLRRQC-ICR-CACYG 66
           H ELAP    WY+    A+   +YLR+Q  + R C  YG
Sbjct: 42  HKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYG 80


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 246 VLPAAVTPRLYLWKNSIY 299
           VLP A++  +YLW  +IY
Sbjct: 188 VLPLAISSCMYLWMQNIY 205


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 223 SLARLSHARECVTSSPSTQSLHQTN*SGTFTFSQRCWCYTCDDN 92
           SLA ++ +   +T  P      + N  G FT    C+  TC  N
Sbjct: 343 SLAFITSSLSAITKEPEAPET-EYNPHGVFTLLTECYSSTCSRN 385


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -3

Query: 265 VTAAGSTSLHSKSRSLARLSHARECVTSSPSTQSLHQ 155
           V++  ++ LH   + + +LS  R C+ SS  +  + +
Sbjct: 190 VSSNTASKLHLGRKDIVKLSELRNCINSSKDSNQIQE 226


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 373 EDSSVHLSGQ*VVGCSHCVY 314
           EDSS    G  ++G SHC Y
Sbjct: 221 EDSSCKFYGGILIGVSHCKY 240


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 119  PLGEGKSTTLIGLVQAL 169
            P G GK+ T+IG++ AL
Sbjct: 1153 PPGTGKTKTIIGIISAL 1169


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 213 GCRMHANALRPRRAHRACTK 154
           GCR    A++ R  H ACT+
Sbjct: 411 GCREVVEAVKARHYHIACTR 430


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 143 TLIGLVQALCARRGRNAFAC 202
           TL+G  Q +C  RGR    C
Sbjct: 201 TLVGFGQTICLPRGRRCDMC 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,624
Number of Sequences: 5004
Number of extensions: 33571
Number of successful extensions: 102
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)