Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I08
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0315 + 16600387-16600557,16600652-16600801,16600874-166008... 161 2e-40
10_01_0153 + 1762333-1762986 29 1.2
04_04_0297 - 24219497-24219853,24221242-24222414 29 1.6
05_07_0337 - 29368823-29368863,29369011-29369104,29369231-293693... 27 3.6
05_07_0177 + 28171863-28171980,28173003-28173082,28173173-281732... 27 3.6
05_07_0171 - 28131533-28131654,28131815-28131908,28132006-281320... 27 3.6
01_01_0534 + 3920356-3920867,3921141-3922134 27 3.6
12_02_0741 - 22690452-22690528,22690693-22690813,22690871-226909... 27 4.8
03_02_0137 + 5832608-5833590,5833680-5833731,5833827-5833904,583... 27 4.8
01_06_0105 + 26507988-26508105,26509398-26509477,26509673-265097... 27 4.8
08_02_0665 + 19818500-19819013,19819169-19819260,19819435-198200... 27 6.3
06_03_0299 + 19281175-19281570 27 6.3
01_05_0711 - 24495399-24495595,24495733-24495826,24495906-244959... 27 6.3
>09_04_0315 +
16600387-16600557,16600652-16600801,16600874-16600897,
16601519-16602694,16603120-16603266,16603477-16603752
Length = 647
Score = 161 bits (390), Expect = 2e-40
Identities = 79/132 (59%), Positives = 93/132 (70%), Gaps = 8/132 (6%)
Frame = +2
Query: 2 PNEVSQYGRTKAKISLSVIDRLRNKRSGKYIVVAGITPTPLGEGKSTTLIGLVQALCARR 181
P YG+ KAK+ LSV+D L+ ++ G Y+VV GITPTPLGEGKSTT +GL QAL A
Sbjct: 45 PEHFDLYGKYKAKVLLSVLDELKGQQDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL 104
Query: 182 --------GRNAFACMRQPSQGPTFGVKXXXXXXXYSQVIPMEEFNLHMTGDIHAVTAAN 337
G C+RQPSQGPTFG+K YSQVIPM+EFNLH+TGDIHA+TAAN
Sbjct: 105 DKKIKFVIGVEVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAAN 164
Query: 338 NLLAAQMDARIF 373
NLLAA +D RIF
Sbjct: 165 NLLAAAIDTRIF 176
>10_01_0153 + 1762333-1762986
Length = 217
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 190 VTSSPSTQSLHQTN*SGTFTFSQRCWCYTCDDNVFAA 80
+ SSPS+ + +G S WCY CD V AA
Sbjct: 1 MASSPSSSFSSSPSAAGAAPASSSYWCYNCDPFVRAA 37
>04_04_0297 - 24219497-24219853,24221242-24222414
Length = 509
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +2
Query: 71 NKRSGK--YIVVAGITPTPLGEG 133
NKRSG Y+V AG+TP P+ G
Sbjct: 44 NKRSGNGDYVVPAGLTPNPMMNG 66
>05_07_0337 -
29368823-29368863,29369011-29369104,29369231-29369347,
29369751-29369804,29369910-29370026,29370170-29370310,
29370402-29370820,29370906-29370934,29371287-29371354,
29371833-29371907
Length = 384
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 80 SGKYIVVAGITPTPLGEGKSTTLIGLVQALCARRGRNAFACMRQPSQGPTFGV 238
+G + +T L EG+S L GL+ LC F +R+ S G T GV
Sbjct: 325 TGSLFLAILVTAFTLQEGESHYLKGLILVLCYAVISVCFFVIRRRSAGGTDGV 377
>05_07_0177 +
28171863-28171980,28173003-28173082,28173173-28173259,
28173796-28173913,28174070-28174126,28174217-28174281,
28174390-28174473,28174599-28174649,28174734-28174796,
28174889-28174935,28175024-28175093,28175363-28175425,
28175523-28175612,28175700-28175738,28175820-28176047,
28176348-28176433,28176515-28176563,28176972-28177052,
28177143-28177236,28177396-28177598
Length = 590
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 86 KYIVVAGITPTPLGEGKSTTLIGLVQALCARR 181
KY+VV G + LG+G + + IG+V C R
Sbjct: 2 KYVVVMGGVISGLGKGVTASSIGVVLKACGLR 33
>05_07_0171 -
28131533-28131654,28131815-28131908,28132006-28132086,
28132199-28132247,28132333-28132418,28132660-28132887,
28132969-28133007,28133281-28133343,28133643-28133712,
28133802-28133848,28133925-28133987,28134075-28134125,
28134421-28134485,28134573-28134629,28134779-28134896,
28135494-28135580,28135672-28135751,28136364-28136481
Length = 505
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 86 KYIVVAGITPTPLGEGKSTTLIGLVQALCARR 181
KY+VV G + LG+G + + IG+V C R
Sbjct: 2 KYVVVMGGVISGLGKGVTASSIGVVLKACGLR 33
>01_01_0534 + 3920356-3920867,3921141-3922134
Length = 501
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 201 HANALRPRRAHRACTKPIKVVLLPSPSGVGVIPATTM 91
HA A + HR C++ + VL+P + IP T M
Sbjct: 6 HAGAGAGDQQHRCCSRTVHFVLVPMMAQGHTIPMTDM 42
>12_02_0741 -
22690452-22690528,22690693-22690813,22690871-22690951,
22691048-22691096,22691324-22691409,22691494-22691571,
22691647-22691796,22691884-22691922,22692194-22692283,
22692568-22692630,22692722-22692791,22693109-22693155,
22693268-22693330,22693411-22693461,22693702-22693785,
22693932-22693996,22694322-22694378,22694452-22694569,
22694664-22694714,22694789-22694875,22694956-22695035,
22695962-22696127
Length = 590
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 80 SGKYIVVAGITPTPLGEGKSTTLIGLVQALCARR 181
S KY+++ G + LG+G + + +G+V C R
Sbjct: 16 STKYVLITGGVVSGLGKGVTASSVGVVLKACGLR 49
>03_02_0137 +
5832608-5833590,5833680-5833731,5833827-5833904,
5835228-5835347,5835618-5835716,5835821-5835975,
5836117-5836257,5836395-5836503
Length = 578
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -3
Query: 268 GVTAAGSTSLHSKSRSLARLSHA 200
G AAG+T+ SK S ARLSHA
Sbjct: 20 GGRAAGNTTPSSKPASRARLSHA 42
>01_06_0105 +
26507988-26508105,26509398-26509477,26509673-26509759,
26510446-26510496,26510581-26510698,26510820-26510924,
26511015-26511079,26511554-26511637,26511741-26511791,
26511874-26511936,26512016-26512062,26512155-26512233,
26512365-26512427,26512761-26512850,26512932-26513168,
26513372-26513457,26513664-26513685,26513686-26513766,
26513859-26513952,26514388-26514566
Length = 599
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 86 KYIVVAGITPTPLGEGKSTTLIGLVQALCARR 181
KY++V G + LG+G + + IG+V C R
Sbjct: 2 KYVLVTGGVVSGLGKGVTASSIGVVLKACGLR 33
>08_02_0665 +
19818500-19819013,19819169-19819260,19819435-19820056,
19820575-19820775,19821327-19821395,19821428-19821522,
19821608-19822153
Length = 712
Score = 26.6 bits (56), Expect = 6.3
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +2
Query: 2 PNEVSQYGRTKAKISLSVIDRLRNKRSGKYIVVAGITPTPLGEGKSTTLIGLVQALCARR 181
P E Q+G K S + ID +N ++GK +TP LG G++ G R+
Sbjct: 172 PGEQGQFGLNKPHSSENAIDNAQNGQNGK------VTPA-LGLGRAAAPAGFPPPRTDRK 224
Query: 182 GR 187
R
Sbjct: 225 SR 226
>06_03_0299 + 19281175-19281570
Length = 131
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 204 CDNRARDLLLE*REVLPAAVTPRLYLWKNSIYI*PVTYT 320
C+N + + +PA VTP L W ++ Y P T T
Sbjct: 34 CNNAMGHRPIAYKTAIPAGVTPSLLRWASASYRPPPTAT 72
>01_05_0711 -
24495399-24495595,24495733-24495826,24495906-24495986,
24496130-24496178,24496281-24496366,24496452-24496679,
24496797-24496835,24496911-24497000,24497093-24497155,
24497233-24497302,24497400-24497446,24497544-24497606,
24497702-24497752,24497851-24497934,24498075-24498139,
24498243-24498299,24498409-24498526,24498624-24498674,
24499100-24499186,24499272-24499351,24500663-24500780
Length = 605
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 86 KYIVVAGITPTPLGEGKSTTLIGLVQALCARR 181
KY++V G + LG+G + + IG+V C R
Sbjct: 2 KYVLVTGGVVSGLGKGVTASSIGVVLKSCGLR 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,534,209
Number of Sequences: 37544
Number of extensions: 258242
Number of successful extensions: 759
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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