Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I08
(375 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36794| Best HMM Match : FTHFS (HMM E-Value=0) 73 1e-13
SB_45254| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_29908| Best HMM Match : Calx-beta (HMM E-Value=2.3e-08) 27 3.7
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0) 27 5.0
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058) 27 5.0
SB_48676| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_55521| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-24) 27 6.5
SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
>SB_36794| Best HMM Match : FTHFS (HMM E-Value=0)
Length = 388
Score = 72.5 bits (170), Expect = 1e-13
Identities = 33/57 (57%), Positives = 39/57 (68%)
Frame = +2
Query: 107 ITPTPLGEGKSTTLIGLVQALCARRGRNAFACMRQPSQGPTFGVKXXXXXXXYSQVI 277
ITPTP GEGKSTT IG+ QA+ A +N F C+RQPSQGPTFG+K Y + I
Sbjct: 2 ITPTPFGEGKSTTTIGVSQAMGAHLKKNCFTCIRQPSQGPTFGIKVIDTNDRYLRKI 58
>SB_45254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 229 SRSLARLSHARECVTSSPSTQSLHQTN*SGTFTFSQRCWCYTCD 98
SR + L R+C S P + + S T+ SQ W + D
Sbjct: 14 SRIMTELKEERDCKCSPPCDVTTYDAQISSTYHPSQSQWSFVSD 57
>SB_29908| Best HMM Match : Calx-beta (HMM E-Value=2.3e-08)
Length = 549
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 112 CYTCDDNVFAAALVTESVDDGQRDLGFSPSVLRHL 8
CYT N FA +T+ DD Q ++GF +RH+
Sbjct: 419 CYT---NQFAVITITD--DDDQAEIGFHGDAVRHV 448
>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 273 LYLWKNSIYI*PVTYTQ*LQPTTY 344
L +WKN I+ P+TY Q P Y
Sbjct: 352 LNMWKNQIFYEPLTYGQYTDPLGY 375
>SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 688
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = -1
Query: 138 LLPSPSGVGVIPATTMYLPLRLLRSRSMT 52
+LP+PS V +PA+T+ LP++ L S +T
Sbjct: 98 ILPAPSKV-TLPASTVVLPVKTLSSPVVT 125
>SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)
Length = 834
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -3
Query: 187 TSSPSTQSLHQTN*SGTFTFSQRCWCYTCDDNVFAAALVTESVDDGQR 44
T++ +T S+ Q + + S R C CD+ + L V DG++
Sbjct: 115 TTAAATVSVEQPDLLAEYAKSSRSTCKHCDEQIVKGELRLAKVMDGEK 162
>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
Length = 1187
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 86 KYIVVAGITPTPLGEGKSTTLIGLVQALCAR 178
K + + GI T + +GK T++GLV ++ R
Sbjct: 72 KLVKMVGINNTDIADGKVMTILGLVWSIILR 102
>SB_48676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 27.1 bits (57), Expect = 5.0
Identities = 20/87 (22%), Positives = 38/87 (43%)
Frame = -3
Query: 295 IEFFHRYNLGVTAAGSTSLHSKSRSLARLSHARECVTSSPSTQSLHQTN*SGTFTFSQRC 116
I F+R+ S+S+H L ++++ R C + P +S ++ T ++
Sbjct: 209 IAIFYRHRRACQNPSSSSVHFLGDILGQMAYIRRCFDTQPLMESNNREKKRQT---EKQI 265
Query: 115 WCYTCDDNVFAAALVTESVDDGQRDLG 35
C T D N +A + D+ R+ G
Sbjct: 266 ECPTPDSN--SAEIDVSQDDEEDRETG 290
>SB_55521| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-24)
Length = 567
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 238 EGRCCRRRLLPGYTYGRIQSTYDR 309
E R RR PGY YGRI++ +DR
Sbjct: 14 EERSSRR---PGYCYGRIRNRHDR 34
>SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 56 IDRLRNKRSGKYIVVAGITPTPLGEGKSTTLIG 154
++ +RN+ G Y VA TP +GE + T ++G
Sbjct: 365 VNIVRNRSDGSY--VARFTPREVGEHRITVMVG 395
>SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/37 (24%), Positives = 17/37 (45%)
Frame = -2
Query: 173 HTELAPNQLKWYFYLLPAVLVLYLRRQCICRCACYGV 63
H +L L WY+ L ++++ C+C G+
Sbjct: 380 HVKLHHKTLPWYYIALDVAIIVFGAVACLCGVVFSGI 416
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,223,804
Number of Sequences: 59808
Number of extensions: 302517
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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