Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I08
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-2|AAC69104.1|  640|Caenorhabditis elegans Hypothetical pr...   186   6e-48
U41552-1|AAC69101.2|  640|Caenorhabditis elegans Hypothetical pr...   186   6e-48
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    27   4.4  
AF022980-14|AAG24190.1|  332|Caenorhabditis elegans Serpentine r...    27   4.4  
AC024799-2|AAK72317.3|  328|Caenorhabditis elegans Serpentine re...    27   5.8  
AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine re...    26   7.6  

>U41552-2|AAC69104.1|  640|Caenorhabditis elegans Hypothetical
           protein K07E3.4a protein.
          Length = 640

 Score =  186 bits (452), Expect = 6e-48
 Identities = 86/122 (70%), Positives = 100/122 (81%)
 Frame = +2

Query: 8   EVSQYGRTKAKISLSVIDRLRNKRSGKYIVVAGITPTPLGEGKSTTLIGLVQALCARRGR 187
           E+  YGR KAK+SL ++DRL   ++GKY+VVAGITPTPLGEGKSTT IGLVQAL A   +
Sbjct: 45  ELDLYGRKKAKVSLDILDRLSEVKNGKYVVVAGITPTPLGEGKSTTTIGLVQALGAHLHK 104

Query: 188 NAFACMRQPSQGPTFGVKXXXXXXXYSQVIPMEEFNLHMTGDIHAVTAANNLLAAQMDAR 367
             FAC+RQPSQGPTFG+K       YSQVIPMEEFNLH+TGDIHA+TAANNLLAA +DAR
Sbjct: 105 KVFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAAIDAR 164

Query: 368 IF 373
           +F
Sbjct: 165 MF 166


>U41552-1|AAC69101.2|  640|Caenorhabditis elegans Hypothetical
           protein K07E3.4b protein.
          Length = 640

 Score =  186 bits (452), Expect = 6e-48
 Identities = 86/122 (70%), Positives = 100/122 (81%)
 Frame = +2

Query: 8   EVSQYGRTKAKISLSVIDRLRNKRSGKYIVVAGITPTPLGEGKSTTLIGLVQALCARRGR 187
           E+  YGR KAK+SL ++DRL   ++GKY+VVAGITPTPLGEGKSTT IGLVQAL A   +
Sbjct: 45  ELDLYGRKKAKVSLDILDRLSEVKNGKYVVVAGITPTPLGEGKSTTTIGLVQALGAHLHK 104

Query: 188 NAFACMRQPSQGPTFGVKXXXXXXXYSQVIPMEEFNLHMTGDIHAVTAANNLLAAQMDAR 367
             FAC+RQPSQGPTFG+K       YSQVIPMEEFNLH+TGDIHA+TAANNLLAA +DAR
Sbjct: 105 KVFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAAIDAR 164

Query: 368 IF 373
           +F
Sbjct: 165 MF 166


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 262  TAAGSTSLHSKSRSLARLSHARECVTSSPSTQSLHQTN*SGTFT 131
            T++G + +  KS+S+A    AR+    SPS   LH    S ++T
Sbjct: 1434 TSSGISIVKQKSQSIAVSPLARDTRMRSPSPSHLHHRPASSSYT 1477


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 262  TAAGSTSLHSKSRSLARLSHARECVTSSPSTQSLHQTN*SGTFT 131
            T++G + +  KS+S+A    AR+    SPS   LH    S ++T
Sbjct: 1434 TSSGISIVKQKSQSIAVSPLARDTRMRSPSPSHLHHRPASSSYT 1477


>AF022980-14|AAG24190.1|  332|Caenorhabditis elegans Serpentine
           receptor, class j protein57 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 191 RYVLAEHTELAPNQLKWYFYLLPAVLVLYLRRQCICRCACYGVGR 57
           RY++  ++ L  N   WY  +   V VLY          CY  GR
Sbjct: 113 RYLVIHNSSLTRNNFHWYLTISAFVFVLYF---ATWHAICYFPGR 154


>AC024799-2|AAK72317.3|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein53 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 191 RYVLAEHTELAPNQLKWYFYLLPAVLVLYLRRQCICRCACYGVGR 57
           RY++ + + L      WY  +   VLVLY          CY  GR
Sbjct: 113 RYLVVQKSSLTDRNFHWYMTISAFVLVLYF---VTWHAICYFPGR 154


>AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein54 protein.
          Length = 328

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 191 RYVLAEHTELAPNQLKWYFYLLPAVLVLY 105
           RY++  ++ LA ++  WY  +   + VLY
Sbjct: 113 RYLVIHNSSLATHKFHWYLTISAIIFVLY 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,274,599
Number of Sequences: 27780
Number of extensions: 195551
Number of successful extensions: 473
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)