Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I08
(375 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50480.1 68414.m05660 formate--tetrahydrofolate ligase / 10-f... 165 1e-41
At4g20320.1 68417.m02967 CTP synthase, putative / UTP--ammonia l... 29 1.3
At5g24380.1 68418.m02874 transporter, putative similar to iron-p... 28 1.8
At4g28690.1 68417.m04099 expressed protein 27 4.1
At3g12670.1 68416.m01579 CTP synthase, putative / UTP--ammonia l... 27 4.1
At2g04540.1 68415.m00460 3-oxoacyl-[acyl-carrier-protein] syntha... 27 4.1
At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR... 27 5.4
At3g17650.1 68416.m02254 oligopeptide transporter OPT family pro... 27 5.4
At2g27950.1 68415.m03388 expressed protein 27 5.4
At5g38500.1 68418.m04654 hypothetical protein contains Pfam prof... 26 7.1
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 26 7.1
At1g65690.1 68414.m07456 harpin-induced protein-related / HIN1-r... 26 7.1
At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR cla... 26 7.1
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l... 26 9.4
At3g46620.1 68416.m05061 zinc finger (C3HC4-type RING finger) fa... 26 9.4
At3g30640.1 68416.m03878 Ulp1 protease family protein contains P... 26 9.4
At1g30820.1 68414.m03768 CTP synthase, putative / UTP--ammonia l... 26 9.4
>At1g50480.1 68414.m05660 formate--tetrahydrofolate ligase /
10-formyltetrahydrofolate synthetase (THFS) identical to
10-formyltetrahydrofolate synthetase (Arabidopsis
thaliana) GI:5921663
Length = 634
Score = 165 bits (400), Expect = 1e-41
Identities = 76/124 (61%), Positives = 90/124 (72%)
Frame = +2
Query: 2 PNEVSQYGRTKAKISLSVIDRLRNKRSGKYIVVAGITPTPLGEGKSTTLIGLVQALCARR 181
P YG+ KAK+ LS D L+ + G Y+VV GITPTPLGEGKSTT +GL QAL A
Sbjct: 40 PLHYDLYGKYKAKVLLSAFDELQGQEDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAYL 99
Query: 182 GRNAFACMRQPSQGPTFGVKXXXXXXXYSQVIPMEEFNLHMTGDIHAVTAANNLLAAQMD 361
+ C+RQPSQGPTFG+K YSQVIPM+EFNLH+TGDIHA+TA+NNLLAA +D
Sbjct: 100 DKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITASNNLLAAAID 159
Query: 362 ARIF 373
RIF
Sbjct: 160 TRIF 163
>At4g20320.1 68417.m02967 CTP synthase, putative / UTP--ammonia
ligase, putative similar to SP|P17812 CTP synthase (EC
6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
Pfam profile PF00117: glutamine amidotransferase class-I
Length = 563
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 86 KYIVVAGITPTPLGEGKSTTLIGLVQALCARR 181
KY+VV+G + LG+G + + IGL+ C R
Sbjct: 2 KYVVVSGGVVSGLGKGVTASSIGLILKSCGFR 33
>At5g24380.1 68418.m02874 transporter, putative similar to
iron-phytosiderophore transporter protein yellow stripe
1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
OPT oligopeptide transporter protein
Length = 652
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 152 QLKWYFYLLPAVLVLYLRRQCICRCACYGVG 60
QLKWYF VLV YL + C YG G
Sbjct: 392 QLKWYF-----VLVAYLLAPSLSFCNAYGAG 417
>At4g28690.1 68417.m04099 expressed protein
Length = 448
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -3
Query: 205 HARECVTSSPSTQSLHQTN*SGTFTFSQRCWCYTCD 98
H R P +LHQT F + C CY CD
Sbjct: 97 HPRHACAKYPFKSTLHQT-------FCEMCHCYVCD 125
>At3g12670.1 68416.m01579 CTP synthase, putative / UTP--ammonia
ligase, putative similar to SP|P17812 CTP synthase (EC
6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
Pfam profile PF00117: glutamine amidotransferase class-I
Length = 591
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 86 KYIVVAGITPTPLGEGKSTTLIGLVQALCARR 181
KY++V G + LG+G + + IGL+ C R
Sbjct: 2 KYVLVTGGVVSGLGKGVTASSIGLLLQACGLR 33
>At2g04540.1 68415.m00460 3-oxoacyl-[acyl-carrier-protein] synthase
II, putative similar to Swiss-Prot:P56902
3-oxoacyl-[acyl-carrier-protein] synthase II (EC
2.3.1.41) (Beta- ketoacyl-ACP synthase II) (KAS II)
[Rhizobium meliloti]
Length = 461
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 80 SGKYIVVAGI-TPTPLGEGKSTTLIGLVQALCARRG 184
S + +VV G+ TPLG G TT L+ C RG
Sbjct: 29 SHRRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRG 64
>At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 241 LHSKSRSLARLSHARECVT 185
LH SRSL RL H C+T
Sbjct: 731 LHISSRSLKRLMHVPPCIT 749
>At3g17650.1 68416.m02254 oligopeptide transporter OPT family
protein similar to iron-phytosiderophore transporter
protein yellow stripe 1 [Zea mays] GI:10770865; contains
Pfam profile PF03169: OPT oligopeptide transporter
protein
Length = 714
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -2
Query: 185 VLAEHTELAPN---QLKWYFYLLPAVLVLYLRRQCICRCACYGVG 60
+ A T + P+ QL+WY+ +LV+Y+ + C YG G
Sbjct: 425 IAATSTAILPHMFHQLRWYY-----ILVIYICAPVLAFCNAYGAG 464
>At2g27950.1 68415.m03388 expressed protein
Length = 767
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 103 CDDNVFAAALVTESVDDGQRDL-GFSPS 23
CD N+ A +V +SV+ G+ +L G+SP+
Sbjct: 79 CDSNISAHDIVRDSVNLGENELGGWSPT 106
>At5g38500.1 68418.m04654 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 411
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 153 VWCKLCVLGEDVTHSRACDNRARDLLLE*RE 245
+W +LC+L E V + + + R LL E RE
Sbjct: 7 MWSRLCLLAETVVMAAEEEEQRRRLLAEKRE 37
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 180 EDVTHSRACDNRARDLLLE*REVLPAAVTPRLYLWKNSI 296
ED H NR + L R LP+ V+ + LW+N +
Sbjct: 739 EDCLHLLVESNRIPEAALMARSYLPSKVSEIVALWRNDL 777
>At1g65690.1 68414.m07456 harpin-induced protein-related /
HIN1-related / harpin-responsive protein-related similar
to hin1 homolog (GI:13122296) [Arabidopsis thaliana];
similar to hin1 (GI:22830759) [Nicotiana tabacum];
contains 1 transmembrane domain;
Length = 252
Score = 26.2 bits (55), Expect = 7.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -2
Query: 101 RRQCICRCACY 69
RR C CRC CY
Sbjct: 58 RRSCCCRCFCY 68
>At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 762
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 143 TLIGLVQALCARRGRNAFACMRQPSQGPTFG 235
TL+ + LC RN+F +P+Q PT G
Sbjct: 15 TLVRIFNFLCGNINRNSFGVEERPTQ-PTIG 44
>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
ligase, putative similar to SP|P17812 CTP synthase (EC
6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
Pfam profile PF00117: glutamine amidotransferase class-I
Length = 556
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 86 KYIVVAGITPTPLGEGKSTTLIGLVQALC 172
KY++V G + LG+G + + IG+V C
Sbjct: 2 KYVLVTGGVVSGLGKGVTASSIGVVLKAC 30
>At3g46620.1 68416.m05061 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 395
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 187 TSSPSTQSLHQTN*SGTFTFSQRCWCYTC 101
T +P+T+S T + T T + WCY+C
Sbjct: 9 TITPTTESTTTTT-TTTTTLTTSYWCYSC 36
>At3g30640.1 68416.m03878 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 661
Score = 25.8 bits (54), Expect = 9.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 62 RLRNKRSGKYIVVAGITPTPLGEGKSTTLIGLVQALCARRGRNA 193
RLR+ + + I A +P G K L L+ A+RGRNA
Sbjct: 274 RLRSTTAARRISKAKTSPKKKGNVKEKILNELIVKEPAKRGRNA 317
>At1g30820.1 68414.m03768 CTP synthase, putative / UTP--ammonia
ligase, putative similar to SP|P17812 CTP synthase (EC
6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
Pfam profile PF00117: glutamine amidotransferase
class-I; similar to ESTs gb|AA660762, gb|AA220982,
dbj|AU008137, gb|AI054783, and gb|AA100804
Length = 600
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 86 KYIVVAGITPTPLGEGKSTTLIGLVQALCARR 181
KY++V G + LG+G + + IG++ C R
Sbjct: 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLR 33
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,793,740
Number of Sequences: 28952
Number of extensions: 184224
Number of successful extensions: 487
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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