Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I07
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128... 31 0.52
02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657... 31 0.52
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 29 2.1
10_06_0037 + 9932967-9933112,9934815-9934822,9935213-9935349,993... 28 4.8
08_02_1622 - 28309472-28309871,28310362-28310399 28 4.8
04_04_1542 - 34264994-34265331,34266195-34267029 28 6.4
01_06_0829 - 32270189-32270863 28 6.4
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 28 6.4
12_02_0899 - 24142210-24142293,24142589-24142634,24142773-241428... 27 8.5
04_03_1022 - 21778315-21779007 27 8.5
02_04_0594 - 24182946-24183641,24184122-24184476,24184553-241847... 27 8.5
>05_05_0132 -
22611030-22611908,22612016-22612135,22612644-22612856,
22612968-22613288,22613421-22613504
Length = 538
Score = 31.5 bits (68), Expect = 0.52
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 147 RKPHHHHTPSPQAKP 191
++PHHHH P PQA P
Sbjct: 59 QQPHHHHPPPPQAAP 73
>02_05_1213 -
34963971-34964658,34965030-34965270,34965347-34965736,
34966515-34966781,34966881-34967249,34967931-34968014,
34968113-34968226,34969952-34970018
Length = 739
Score = 31.5 bits (68), Expect = 0.52
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 129 PRIRLHRKPHHHHTPSPQAKPQ 194
P + HR+P+H H+PSP PQ
Sbjct: 67 PSHKHHRRPYHPHSPSPSPLPQ 88
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 156 HHHHTPS--PQAKPQ*SLVIQFK*LSRAWHR 242
HHHHTPS P + PQ SL Q S A HR
Sbjct: 20 HHHHTPSVGPSSPPQDSLAAQAMRASAA-HR 49
>10_06_0037 +
9932967-9933112,9934815-9934822,9935213-9935349,
9935761-9936438
Length = 322
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -2
Query: 178 GDGVWWW*GLRWSRMRGYHAHTDLRW 101
GDG+WWW + G+ + RW
Sbjct: 8 GDGLWWWLKEKGKEKNGFISPRQSRW 33
>08_02_1622 - 28309472-28309871,28310362-28310399
Length = 145
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 190 GFAWGDGVWWW*GLRWSRMRG 128
G W GVWWW RW RG
Sbjct: 33 GGKWRQGVWWW---RWRGGRG 50
>04_04_1542 - 34264994-34265331,34266195-34267029
Length = 390
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 144 HRKPHHHHTPSPQAKP 191
H HHHH P PQ P
Sbjct: 245 HHHGHHHHPPPPQPPP 260
>01_06_0829 - 32270189-32270863
Length = 224
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +1
Query: 37 VPVYDSGCDSSDPRRCQCA*SAT*DLYEHDTPASGSTASLTTTIHHHPKQSHSEAW 204
VP+Y G S+DPR A + PA A+ + HHH H + W
Sbjct: 77 VPLYGRGKASTDPRSRSVA-----GVQIPSRPAGQRPATASQPDHHHDHLPHHDPW 127
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 27.9 bits (59), Expect = 6.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 148 RWSRMRGYHAHTDLRWH 98
+W + GYH T L+WH
Sbjct: 51 KWCSLEGYHGITRLKWH 67
>12_02_0899 -
24142210-24142293,24142589-24142634,24142773-24142886,
24143445-24143566,24144361-24144480,24144581-24144664,
24144813-24144914,24145589-24145604,24147929-24148329
Length = 362
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 118 EHDTPASGSTASLTTTIHHH 177
+H TP S + A+ T HHH
Sbjct: 24 DHSTPTSAAAAAAATASHHH 43
>04_03_1022 - 21778315-21779007
Length = 230
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 129 PRIRLHRKPHHHHTPSPQAKP 191
P I H PHHHH P+P P
Sbjct: 83 PYIPPHH-PHHHHPPTPAPAP 102
>02_04_0594 -
24182946-24183641,24184122-24184476,24184553-24184743,
24184840-24185046
Length = 482
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 379 PFVSHGVALFAAVCKLSHWVVRIDGPLADDLVPLTSLEVD 260
P +H L +VC L H+V R++ DL PL L D
Sbjct: 186 PDDAHAFLLPISVCNLVHYVYRLNA--TGDLAPLRGLVAD 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,712,770
Number of Sequences: 37544
Number of extensions: 372641
Number of successful extensions: 1203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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