Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I06
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.32 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    28   1.3  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    26   3.9  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    26   5.2  
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    25   6.9  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = -2

Query: 627 TSSFAISAWSR*SAFVKSMSYSSIKVTIFSDTTRSTLTPGKSSSSR 490
           +SS + S++S  ++  KS S  S  V+  S T+ STLT   SSSSR
Sbjct: 347 SSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSR 392


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = +2

Query: 239  DVEMLARLILG--GMNVANDDAKMFHMMTMFRKMLSYNQYNMDKYTYVPTALDMYTTCLR 412
            D  + + LI G  G     DD   +H M +    L  + Y   K  +   AL   TTC  
Sbjct: 1526 DFNVESSLITGLRGKTKKEDDLVKYHNMILKTIELLSSSYPELKQIWGEVALSWATTC-- 1583

Query: 413  DPVFWKIMKRVMNSFVLFKNMLPSY 487
                    +   NSF LF+++LP +
Sbjct: 1584 -----PSRRLACNSFQLFRSLLPDF 1603


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 458 VLFKNMLPSYTREELDF 508
           +L +N LPSYT EEL F
Sbjct: 176 LLIENPLPSYTSEELKF 192


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 137 KMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEMLARLILGG 274
           K  LDD+E+ I +G+   K   +D  +I      D+++  RLI  G
Sbjct: 382 KTYLDDLERAIDDGVNIVKALVKDNRLIFGAGASDMQLCIRLISVG 427


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 359 DKYTYVPTALDMYTTCLRDPVFW---KIMKR 442
           DKY   P A D+ T CL +P  +   K++KR
Sbjct: 93  DKYKDRPIARDLGTVCLHNPKLFQGNKLLKR 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,928
Number of Sequences: 5004
Number of extensions: 58235
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)