Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I06
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 31 0.76
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 31 1.0
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 29 2.3
06_01_1002 + 7796367-7796651,7796727-7797489,7797800-7797915 29 4.1
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 28 7.1
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130... 27 9.4
03_02_1034 + 13555569-13556084,13556096-13556527 27 9.4
01_07_0310 + 42660671-42660795,42660996-42661026,42662958-426630... 27 9.4
01_06_1113 + 34613668-34614075,34614781-34614970,34615264-346153... 27 9.4
01_01_0513 + 3736893-3737047,3737298-3737340,3737631-3737765,373... 27 9.4
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 326 RKMLSYNQYNMDKYTYVPTALDMYTTCLRDPVF--WKIMKRVM 448
R+M+SY+ + TY+P +++ C+R+P F W++ +++M
Sbjct: 155 REMMSYSYAALK--TYMPEMVEVLIDCVRNPAFLDWEVKEQIM 195
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -1
Query: 325 EHCHHMEHFGIVIGH-IHATEDKSGKHFHVFGFLQIDHGSI-TTFDFAC*DSFADHLLNI 152
E CH M GIV+GH + EDK + F ++ F +D I T F+ A F++ L+I
Sbjct: 468 EKCHFMVREGIVLGHRVFEREDKIMEKFIIY-FFCLDLLKIQTKFNRAYLLQFSESKLHI 526
Query: 151 I 149
I
Sbjct: 527 I 527
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 131 KLKMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEM-LARLILGGMNVANDDAKMF 307
KL +LL + +QM++EG LT D + + KK D M + IL MN + +M
Sbjct: 515 KLLVLLQNGKQMVQEGALTALASVADSSQEHFKKYYDAVMPYLKAIL--MNATDKSNRML 572
Query: 308 HMMTM 322
+M
Sbjct: 573 RAKSM 577
>06_01_1002 + 7796367-7796651,7796727-7797489,7797800-7797915
Length = 387
Score = 28.7 bits (61), Expect = 4.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +3
Query: 558 WMNMTWISRMHFTWTRLRW 614
W N+ W + H+ W +RW
Sbjct: 115 WRNIHWSEQQHWMWMNIRW 133
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 338 SYNQYNMDKYTYVPTALDMYTTCLRDP-----VFWKIMKRVMNSFVLFKNMLPSYT 490
SY Y ++ + + ++ CL D VFWK + F+L K +LP Y+
Sbjct: 464 SYEAYRKQQHRWHSGPMQLFRLCLPDIIKCKIVFWKKANLIFLFFLLRKLILPFYS 519
>07_01_0184 -
1304328-1304951,1305328-1305441,1305549-1305839,
1305930-1306238,1306326-1307048
Length = 686
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 338 SYNQYNMDKYTYVPTALDMYTTCLRDPV-----FWKIMKRVMNSFVLFKNMLPSYT 490
SY Y ++ + + ++ CL D + FWK + F+L K +LP Y+
Sbjct: 449 SYEAYRKQQHRWHSGPMQLFRLCLPDIIRCKIAFWKKANLIFLFFLLRKLILPFYS 504
>03_02_1034 + 13555569-13556084,13556096-13556527
Length = 315
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 179 ILTGKIERRDGTMINLK---KPEDVEMLARLILGGMNVANDDA 298
+L+G R DG ++ + P D+ L R+ L G NV D+A
Sbjct: 218 LLSGFATRSDGPELDDQLELTPRDIRRLVRMALKGKNVERDEA 260
>01_07_0310 +
42660671-42660795,42660996-42661026,42662958-42663079,
42663428-42663544,42663881-42663950
Length = 154
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 38 KNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIRE 175
K +W ++ D P N +PV + N K K QM+R+
Sbjct: 100 KVNFWRRLSQMKADHEPSASNKRLPVINHNYKSKRYATLTPQMMRQ 145
>01_06_1113 +
34613668-34614075,34614781-34614970,34615264-34615372,
34615822-34615912,34615948-34616076,34616306-34616804,
34617154-34617251
Length = 507
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 455 FVLFKNMLPSYTREELDFPGVKVERVVSEKMVTFMDEYDM 574
F++ N Y + L+FP VKV ++ E + D D+
Sbjct: 420 FMVLNNFFSDYPDKPLEFPSVKVNQIELESNIAEEDLDDL 459
>01_01_0513 +
3736893-3737047,3737298-3737340,3737631-3737765,
3737879-3738010,3738129-3738278,3738353-3738373,
3738468-3738675,3738796-3738877,3738983-3739088,
3739245-3739358,3739458-3739685
Length = 457
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 5 DIKMFM--WNEPVKNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKM 142
D K F+ W E N WP + +P G ++Q F +K++M
Sbjct: 109 DTKAFLAAWEETCNNEGWPILIIPGGRTFLLKQIKFNGSCKSPIKIQM 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,620,829
Number of Sequences: 37544
Number of extensions: 358712
Number of successful extensions: 921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -