Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I06
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)                       33   0.25 
SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)                29   4.1  
SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_10099| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.6e-17)         28   5.5  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)             28   7.2  
SB_21845| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_607| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.2  
SB_45900| Best HMM Match : Chordopox_A13L (HMM E-Value=7.4)            28   7.2  

>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
          Length = 590

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 403 SSVHIESSGNVRVLVHIILIVTQHFSEHCHHMEH 302
           SS+   SS ++ ++ HII+I+T   + H HH  H
Sbjct: 394 SSLTSSSSPHLSIITHIIIIITPLANHHSHHHHH 427


>SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 517 DTREIKFLASITRQHVFEKHERVHDAFHYLPE 422
           D+R  KF AS  R   FE H R+    HY P+
Sbjct: 2   DSRGSKFFASSFR--TFENHRRISSGRHYFPK 31


>SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)
          Length = 329

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 344 NQYNMDKYTYVPTALDMYTTCLRDPVFWKIM 436
           NQ NM ++  VPT  ++  TCL   +F  +M
Sbjct: 290 NQCNMSEHYRVPTRSEITKTCLEPNIFQNLM 320


>SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 141 CF*MMLSR*SAKES*QAKSNVVMEP*SI*RNPKTWKCL 254
           C  ++L + +AKES +  +N   EP     N K W CL
Sbjct: 139 CKRVLLKKDNAKESMEGLTNACKEPLQEKANQKMWNCL 176


>SB_10099| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.6e-17)
          Length = 629

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +2

Query: 449 NSFVLFKNMLPSYTREELDFPGVKVERVVSE-----KMVTFMDEYDMDFTNALYLDQ 604
           NS ++ KN+L  Y R     PG K E VV         +  M E +MDFT  +YL Q
Sbjct: 343 NSTLVLKNLLEGYDRRIR--PGSKGEPVVVYVDMYVSNIWAMQEMNMDFTIDIYLRQ 397


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 461 LFKNMLPSYTREELDFPGVKVERVVSEKMVTFMDEYDMDFTNALYLDQAEMAKEE 625
           L ++ L   + E+ D   V+  RV+SE+    + + D+D  +++YL    + +E+
Sbjct: 505 LSQHTLELSSEEDHDMDDVRNSRVLSEEARNILSDLDLDNNHSVYLGGLLVTEEK 559


>SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)
          Length = 839

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 8   IKMFMWNEPVKNGYWPKI-RLPNGDEMPVRQNNFVP 112
           IK+    E V+N ++ K  R PNG+++     NFVP
Sbjct: 97  IKLVTEMESVRNRWFDKFGRYPNGEDIDRMYKNFVP 132


>SB_21845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 517 DTREIKFLASITRQHVFEKHERVHDAFHYLPE 422
           D+R  KFLA   R   FE H R+    HY P+
Sbjct: 2   DSRGSKFLAGSFR--TFENHRRISSDRHYFPK 31


>SB_607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 517 DTREIKFLASITRQHVFEKHERVHDAFHYLPE 422
           D+R  KF AS  R   FE H R+    HY P+
Sbjct: 2   DSRGSKFFASSFR--TFENHRRISSDRHYFPK 31


>SB_45900| Best HMM Match : Chordopox_A13L (HMM E-Value=7.4)
          Length = 152

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 379 GNVRVLVHIILIVTQHFSEHCHHMEH-FGIVIGHIHATEDKSGKH 248
           G + + +  + IVT H  +H HH  H  G  +G  +    KS +H
Sbjct: 10  GVIIIAISTVAIVTGHLQQHHHHHFHQCGHYLGLNYPFVPKSSRH 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,309,615
Number of Sequences: 59808
Number of extensions: 426280
Number of successful extensions: 1195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)