Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I06
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical ...    31   0.69 
Z79694-7|CAB01964.1|  396|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z69637-4|CAA93469.1|  539|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal mem...    28   4.8  

>AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical
           protein T20H9.6 protein.
          Length = 758

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 434 MKRVMNSFVLFKNMLPSYTREELDFPGVKVE 526
           ++ V+N  + FKN+LP+++   LD+ GV ++
Sbjct: 558 LRTVVNEVINFKNLLPAFSANLLDYGGVFIQ 588


>Z79694-7|CAB01964.1|  396|Caenorhabditis elegans Hypothetical
           protein C15A11.7 protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 448 HDAFHYLPEYW 416
           HD FHY PEYW
Sbjct: 75  HDFFHYYPEYW 85


>Z69637-4|CAA93469.1|  539|Caenorhabditis elegans Hypothetical
           protein F35G2.4 protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = +2

Query: 371 YVPTALDMYTTCLRDPVFWKIMKRVM---NSFVLFKNMLPSYTREELDFPGVKVERVVSE 541
           +V   ++ Y    R    WK ++ +M    +    KN+  +  R E+ FPG +     + 
Sbjct: 74  FVTNPINAYLLIKRLTTEWKKVENIMLNNKASTFLKNITDNRVRSEVKFPGEEDLSGAAT 133

Query: 542 KMVTFMDEYDMD 577
            ++   D Y +D
Sbjct: 134 ALLRLQDTYSLD 145


>U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 1 protein.
          Length = 665

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 89  VRQNNFVPVTSENLKLKMLLD-DVEQMIREGILTGKIERRDG 211
           +R     P TS ++K+K + D D+EQM+    LT  +ER  G
Sbjct: 525 LRDQVIYPDTSFDMKMKGMSDKDLEQMLENVQLTNILEREGG 566


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,245,262
Number of Sequences: 27780
Number of extensions: 327546
Number of successful extensions: 1027
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)