Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I06
(634 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ... 31 0.84
At3g58790.1 68416.m06552 glycosyl transferase family 8 protein c... 29 3.4
At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p... 28 4.5
At4g39210.1 68417.m05551 glucose-1-phosphate adenylyltransferase... 28 4.5
At2g01820.1 68415.m00113 leucine-rich repeat protein kinase, put... 28 4.5
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 28 5.9
At1g27680.1 68414.m03383 glucose-1-phosphate adenylyltransferase... 28 5.9
At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb... 28 5.9
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb... 28 5.9
At2g21590.1 68415.m02568 glucose-1-phosphate adenylyltransferase... 27 7.8
At2g06820.1 68415.m00761 expressed protein low similarity to zin... 27 7.8
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 27 7.8
>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
SP|Q42510 Pattern formation protein EMB30 (GNOM)
{Arabidopsis thaliana}; contains Pfam profile PF01369:
Sec7 domain
Length = 1375
Score = 30.7 bits (66), Expect = 0.84
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = -1
Query: 580 EIHVIFIHKGDHLFRYNAFNFDTREIKFLASITRQHVFEKHERVHDAFHYLPEYWIS*AS 401
E+H+ + H F + N DT FL S +K ER+ +AF E + S
Sbjct: 554 ELHLSVLRSFTHTFEFTGMNLDTALRTFLESFRLPGESQKIERMIEAF---SERFYDQQS 610
Query: 400 SVHIESSGNVRVLVH--IILIVTQH 332
S S V +L + I+L QH
Sbjct: 611 SDIFASKDTVHILCYSLIMLNTDQH 635
>At3g58790.1 68416.m06552 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8; general stress protein gspA, Bacillus
subtilis, PIR:S16423
Length = 540
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = -1
Query: 511 REIKFLASITRQHVFEKHERVHDAFHYLPEYWIS*ASSVHIESSGNVRVLVHIILIVTQH 332
R+I+ AS+T++ + + +V A H+ YW H+ S G + L + L +T+
Sbjct: 138 RDIRAFASVTKKMLLQMERKVQSAKHHELVYW-------HLASHGIPKSLHCLSLRLTEE 190
Query: 331 FS 326
+S
Sbjct: 191 YS 192
>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
protein contains Pfam profile: PF03130 PBS lyase
HEAT-like repeat
Length = 1116
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 131 KLKMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEM-LARLILGGMNVANDDAKMF 307
KL +LL + +QM++EG LT D + + +K D M + IL MN + +M
Sbjct: 508 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDTVMPYLKTIL--MNATDKSKRML 565
Query: 308 HMMTM 322
+M
Sbjct: 566 RAKSM 570
>At4g39210.1 68417.m05551 glucose-1-phosphate adenylyltransferase
large subunit 3 (APL3) / ADP-glucose pyrophosphorylase
identical to SP|P55231
Length = 521
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 583 REIHVIFIHKGDHLFRYNAFNFDTREIKFLASIT 482
R I I I GDHL+R N +F + A IT
Sbjct: 206 RNIENIIILSGDHLYRMNYMDFVQHHVDSKADIT 239
>At2g01820.1 68415.m00113 leucine-rich repeat protein kinase,
putative similar to protein kinase TMK1
gi|166888|gb|AAA32876; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain
Length = 943
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 406 ASSVHIESSGNVRVLVHIILIVTQHFSE 323
AS +H+ +GN+ + + ++ VT +FSE
Sbjct: 560 ASDIHVVEAGNLVISIQVLRNVTNNFSE 587
>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
identical to SP|Q9SMV7 DNA mismatch repair protein
MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
thaliana}; GC donor splice site at exon 11
Length = 1109
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 77 DEMPVRQNNFVPVTSENLKLKMLLDDV---EQMIREGILTGKIERRDGTMINLKKPED 241
DEM +++ VPV N +LKML D V ++ + EG +E N ++P+D
Sbjct: 193 DEMTFKEDK-VPVLDSNKRLKMLQDPVCGEKKEVNEGTKFEWLESSRIRDANRRRPDD 249
>At1g27680.1 68414.m03383 glucose-1-phosphate adenylyltransferase
large subunit 2 (APL2) / ADP-glucose pyrophosphorylase
identical to SP|P55230
Length = 518
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 583 REIHVIFIHKGDHLFRYNAFNFDTREIKFLASIT 482
+ + + I GDHL+R + NF + I+ A IT
Sbjct: 203 KNVEHVLILSGDHLYRMDYMNFVQKHIESNADIT 236
>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
(RbohB) / NADPH oxidase identical to respiratory burst
oxidase protein B from Arabidopsis thaliana [gi:3242783]
Length = 843
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 522 LNALYLKRWSPLWMNMTWIS--RMHFTWTRLRWQKK 623
++ +L+ W +W+ WIS FTW L++++K
Sbjct: 287 ISYFFLENWKRIWVLTLWISICITLFTWKFLQYKRK 322
>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
(RbohB) / NADPH oxidase identical to respiratory burst
oxidase protein B from Arabidopsis thaliana [gi:3242783]
Length = 622
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 522 LNALYLKRWSPLWMNMTWIS--RMHFTWTRLRWQKK 623
++ +L+ W +W+ WIS FTW L++++K
Sbjct: 287 ISYFFLENWKRIWVLTLWISICITLFTWKFLQYKRK 322
>At2g21590.1 68415.m02568 glucose-1-phosphate adenylyltransferase
large subunit, putative / ADP-glucose pyrophosphorylase,
putative strong similarity to SP|P55231
Length = 523
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 583 REIHVIFIHKGDHLFRYNAFNFDTREIKFLASIT 482
R I I I GDHL+R N +F + A IT
Sbjct: 208 RNIENILILSGDHLYRMNYMDFVQSHVDSNADIT 241
>At2g06820.1 68415.m00761 expressed protein low similarity to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 267
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = +2
Query: 113 VTSENLKLKMLLDDVEQMIREGIL 184
+TS ++K+K+LLD ++ +I+E I+
Sbjct: 151 ITSSSVKIKVLLDGLQPLIKETIV 174
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 77 DEMPV-RQNNFVPVTSENLKLKMLLDDVEQMIRE 175
DE+PV Q+ + + +EN KLK L+ +E+ I E
Sbjct: 1037 DEVPVIDQSAIIKLETENQKLKALVSSMEEKIDE 1070
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,340,668
Number of Sequences: 28952
Number of extensions: 300517
Number of successful extensions: 844
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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