Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I05
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.6  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   2.9  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    25   8.7  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   8.7  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
 Frame = +2

Query: 14   FVLDTSGS---MSGRKMEQLKEAMYTILNELNPGDYFSIIDFESIITVHELSEADKEKTR 184
            F+L+TSG+    + + +  +K  +Y       P     I+D      ++ LS  DK+   
Sbjct: 1446 FILETSGTSQLFAHQILWNMKANLYKDEAATVPDSIKPILDRVMDKMINSLSGEDKQFYE 1505

Query: 185  YKYFYYNEIQPKLDLVAPYQATPENIEKAKI 277
             ++ ++NE+      + P+    +  +KAKI
Sbjct: 1506 REFTFFNEVTSISGKLKPFIRKSKPEKKAKI 1536


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 25/100 (25%), Positives = 47/100 (47%)
 Frame = +2

Query: 59  QLKEAMYTILNELNPGDYFSIIDFESIITVHELSEADKEKTRYKYFYYNEIQPKLDLVAP 238
           QL  +++ I N LN  D +  +D  S    H +   DKEK+++   YY     K++++  
Sbjct: 49  QLLRSIHIIQNLLNELDNY--VD-RSDCLFHSVWRTDKEKSKFSGNYYPFSPSKMNVITI 105

Query: 239 YQATPENIEKAKIIISRLESIGGTDINTALTVAVDLINKY 358
             +   +    + +IS+L   G     + L V ++  NK+
Sbjct: 106 DLSLRSSSTADEKLISQL---GEEAHESLLKVHIEKANKH 142


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 379 LSSISSSIFVDEIHRYGQGRVDV 311
           L+   + IF+DE+HR+ + + D+
Sbjct: 174 LTGRKTIIFLDEVHRFNRAQQDI 196


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 263 EKAKIIISRLESIGGTDINTALTVAVDLINK 355
           E A +++S LE++  T+       AVD +NK
Sbjct: 84  EYAHVLLSPLENLAATEETVVRDKAVDSLNK 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,166
Number of Sequences: 5004
Number of extensions: 42614
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)