Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I05
(511 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy cha... 49 2e-06
At5g60710.1 68418.m07618 zinc finger (C3HC4-type RING finger) fa... 43 1e-04
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa... 42 2e-04
At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger) fa... 40 7e-04
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa... 40 0.001
At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger) fa... 40 0.001
At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) fa... 40 0.001
At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy cha... 38 0.005
At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD, chlor... 31 0.45
At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogen... 29 2.4
At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogen... 28 4.2
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 28 4.2
At5g65950.1 68418.m08302 expressed protein 27 5.5
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ... 27 5.5
At4g21210.1 68417.m03066 expressed protein contains Pfam domain ... 27 5.5
At4g18490.1 68417.m02742 hypothetical protein 27 5.5
At4g18700.1 68417.m02765 CBL-interacting protein kinase 12 (CIPK... 27 7.3
>At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy
chain-related similar to SP|Q61704 Inter-alpha-trypsin
inhibitor heavy chain H3 precursor {Mus musculus};
contains Pfam profile PF00092: von Willebrand factor
type A domain
Length = 754
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +2
Query: 8 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFES 136
VVFV+D S SM+G+ +E +K A+ T L++L+PGD F+II F +
Sbjct: 329 VVFVVDISKSMTGKPLEDVKNAISTALSKLDPGDSFNIITFSN 371
>At5g60710.1 68418.m07618 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P97280
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
{Mesocricetus auratus}; contains Pfam profiles PF00097:
Zinc finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 704
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +2
Query: 8 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFES 136
+V VLD SGSM+G K+ LK AM ++ L P D S+I F S
Sbjct: 253 LVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPFDRLSVISFSS 295
>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 641
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +2
Query: 8 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFESI 139
++ VLD SGSM G KME +K AM ++ L D S+I F S+
Sbjct: 205 LITVLDVSGSMDGVKMELMKNAMSFVIQNLGETDRLSVISFSSM 248
>At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger)
family protein very low similarity to SP|P97280
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
{Mesocricetus auratus}; contains Pfam profiles PF00097:
Zinc finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 692
Score = 40.3 bits (90), Expect = 7e-04
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = +2
Query: 8 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFES----IITVHELSEADKE 175
+V VLD SGSM+G K+ LK AM ++ L D S+I F S + + ++S+A ++
Sbjct: 254 LVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLTKMSDAGRQ 313
Query: 176 K 178
+
Sbjct: 314 R 314
>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 683
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = +2
Query: 8 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFES 136
+V VLD SG SG K+E LK+ M +L+ L D SII F S
Sbjct: 303 LVAVLDVSGRNSGGKLEMLKQTMRIVLSNLREMDRLSIIAFSS 345
>At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 676
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = +2
Query: 8 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFES 136
+V VLD SGSM G K+ LK AM ++ L D S+I F S
Sbjct: 245 LVTVLDISGSMGGTKLALLKRAMGFVIQNLGSSDRLSVIAFSS 287
>At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 675
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = +2
Query: 8 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFES 136
+V VLD SGSM G K+ LK AM ++ L D S+I F S
Sbjct: 244 LVTVLDISGSMGGTKLALLKRAMGFVIQNLGSSDRLSVIAFSS 286
>At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy
chain-related low similarity to Inter-alpha-inhibitor H4
heavy chain [Rattus norvegicus] GI:2292988; contains
Pfam profile PF00092: von Willebrand factor type A
domain
Length = 758
Score = 37.5 bits (83), Expect = 0.005
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +2
Query: 8 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFESII 142
VVFV+D S SM + +E +K+A+ L +L D F+II F I
Sbjct: 329 VVFVIDISASMKWKPLEDVKKALLECLAKLQAEDVFNIIAFNDEI 373
>At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative (CHLD) similar to Mg-chelatase SP|O24133 from
Nicotiana tabacum, GB:AF014399 GI:2318116 from [Pisum
sativum]
Length = 760
Score = 31.1 bits (67), Expect = 0.45
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 8 VVFVLDTSGSMSGRKMEQLKEAMYTILNE-LNPGDYFSIIDF 130
V+FV+D SGSM+ +M+ K A +L E D SII F
Sbjct: 559 VIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPF 600
>At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 266 KAKII-ISRLESIGGTDINTALTVAVDLINKYAGGNARQDV 385
KA +I +S+ S+G DIN + + +I Y GG ARQD+
Sbjct: 340 KAVMIGLSQAGSVGEIDINRLVRRKIKVIGSY-GGRARQDL 379
>At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 266 KAKII-ISRLESIGGTDINTALTVAVDLINKYAGGNARQDV 385
KA +I +S+ S+G DIN + V +I Y GG ARQD+
Sbjct: 340 KAVMIGLSQAGSVGEIDINRLVRRKVWVIGSY-GGRARQDL 379
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 38 MSGRKMEQLKEAMYTILNELNPGDYFSIIDFESIITVHELSEADK 172
++G ++ MY +LN L P + S+ FE H+L+ A+K
Sbjct: 842 LTGTPLQNNIGEMYNLLNFLQPSSFPSLSSFEE--RFHDLTSAEK 884
>At5g65950.1 68418.m08302 expressed protein
Length = 865
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/73 (20%), Positives = 35/73 (47%)
Frame = +2
Query: 56 EQLKEAMYTILNELNPGDYFSIIDFESIITVHELSEADKEKTRYKYFYYNEIQPKLDLVA 235
+++ + +I + G + +++ IT+H ++ D+E TRY +Q L ++A
Sbjct: 70 QEIDSSSASITPSVYVGQFAQLLEKGEAITLHSIT--DEEYTRYTISEAKRVQDSLQIIA 127
Query: 236 PYQATPENIEKAK 274
+ + E+ K
Sbjct: 128 WLKRSYESFTNLK 140
>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 977
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 98 NPGDYFSIIDFESIITVHELSEADKEKTRYKYFYYNEIQPKLDLVAPYQATPE 256
N G Y +I E + + L E D Y Y +E+ LD+ +A P+
Sbjct: 309 NSGTYSNIEHLEMDLNIEHL-EMDSNSDTYVYIKLSELDSDLDIEFDLEADPD 360
>At4g21210.1 68417.m03066 expressed protein contains Pfam domain
PF03618: Domain of unknown function (DUF299)
Length = 403
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 245 ATPENIEKAKIIISRLESIGGTDINTAL 328
A PEN+EKA I++ + G T ++T L
Sbjct: 255 ALPENLEKADIVLVGVSRTGKTPLSTYL 282
>At4g18490.1 68417.m02742 hypothetical protein
Length = 594
Score = 27.5 bits (58), Expect = 5.5
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +2
Query: 131 ESIITVHELSEADKEKTRYKYFYYNEIQPKLDLVAPYQATPENIEKAKIIISRLESIGGT 310
ES I E KE + K Y N L++ P +NIEKA+ LE
Sbjct: 486 ESRIDTKTTKEPVKESPQTKSHYQNINMANLEI--PITENADNIEKAEAYTKELE----- 538
Query: 311 DINTALTVAVDLIN 352
++N AL ++++N
Sbjct: 539 NVNRALFSIMNILN 552
>At4g18700.1 68417.m02765 CBL-interacting protein kinase 12 (CIPK12)
identical to CBL-interacting protein kinase 12
[Arabidopsis thaliana] gi|13249123|gb|AAK16687; contains
Pfam profiles PF00069: Protein kinase domain and
PF03822: NAF domain; identical to cDNA CBL-interacting
protein kinase 12 (CIPK12) GI:13249122
Length = 489
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 119 IIDFESIITVHELSEADKEKTRYKYFYYNEIQPKL 223
I + + V E+ + +KT Y+ F NE++PKL
Sbjct: 418 IFELTPSLVVVEVKKKGGDKTEYEDFCNNELKPKL 452
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,275,170
Number of Sequences: 28952
Number of extensions: 221835
Number of successful extensions: 519
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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