Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I04
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0517 - 25118232-25118730,25119002-25119273                       28   2.7  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   2.7  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   4.6  
12_02_0219 + 15822050-15824896                                         27   8.1  

>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 99  DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 209
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 234 SHHGREGCRIAWVDNWDD*NRR 169
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 192 YPPKRYDNPLARGGK 236
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>12_02_0219 + 15822050-15824896
          Length = 948

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 1   DNSDTIRQ*KLSC-FSSSPYWPWL 69
           D  D +R+ ++ C F+  P WPWL
Sbjct: 269 DFGDPLRKHEMHCRFTQGPPWPWL 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,359,505
Number of Sequences: 37544
Number of extensions: 167865
Number of successful extensions: 392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)