Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I04
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48264| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 27   4.8  
SB_12388| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_18324| Best HMM Match : YTV (HMM E-Value=0.019)                     27   8.3  
SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_48264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 116 LREERIRVRNNNSVCGSHGQYGEEEKHESFHCR 18
           LR  R+ + +NN   GSH +   E   ESFH +
Sbjct: 58  LRPSRMSIHSNN---GSHARLAREPSKESFHSK 87


>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -1

Query: 267 FKIAYLY--ETFTSHHGREGCRI-AWVD 193
           F++A L   E + SH GREGC+   WVD
Sbjct: 75  FRLAQLLNEENWPSHLGREGCQFWIWVD 102


>SB_12388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 49  SPYWPWLPQTELLLRTRILSSLNHQTVLAEIMN 147
           +P+W WL    + L ++  S +    +LAEI N
Sbjct: 22  NPHWNWLAVKLMWLLSKYPSGITKAIILAEIQN 54


>SB_18324| Best HMM Match : YTV (HMM E-Value=0.019)
          Length = 212

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 70  PQTELLLRTRILSSLNHQTVLAEIMNP 150
           P TE+ ++  I+S L   T+  EIM+P
Sbjct: 23  PLTEMTIQYEIMSPLTEMTIQYEIMSP 49



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 70  PQTELLLRTRILSSLNHQTVLAEIMNP 150
           P TE+ ++  I+S L   T+  EIM+P
Sbjct: 36  PLTEMTIQYEIMSPLTEMTIQYEIMSP 62



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 70  PQTELLLRTRILSSLNHQTVLAEIMNP 150
           P TE+ ++  I+S L   T+  EIM+P
Sbjct: 49  PLTEMTIQYEIMSPLTEMTIQYEIMSP 75



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 70  PQTELLLRTRILSSLNHQTVLAEIMNP 150
           P TE+ ++  I+S L   T+  EIM+P
Sbjct: 62  PLTEMTIQYEIMSPLTEMTIQYEIMSP 88



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 70  PQTELLLRTRILSSLNHQTVLAEIMNP 150
           P TE+ ++  I+S L   T+  EIM+P
Sbjct: 75  PLTEMTIQYEIMSPLTEMTIQYEIMSP 101



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 70  PQTELLLRTRILSSLNHQTVLAEIMNP 150
           P TE+ ++  I+S L   T+  EIM+P
Sbjct: 88  PLTEMTIQYEIMSPLTEMTIQYEIMSP 114



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 70  PQTELLLRTRILSSLNHQTVLAEIMNP 150
           P TE+ ++  I+S L   T+  EIM+P
Sbjct: 101 PLTEMTIQYEIMSPLTEMTIQYEIMSP 127



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 70  PQTELLLRTRILSSLNHQTVLAEIMNP 150
           P TE+ ++  I+S L   T+  EIM+P
Sbjct: 114 PLTEMTIQYEIMSPLTEMTIQYEIMSP 140



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 70  PQTELLLRTRILSSLNHQTVLAEIMNP 150
           P TE+ ++  I+S L   T+  EIM+P
Sbjct: 127 PLTEMTIQYEIMSPLTEMTIQYEIMSP 153


>SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 171 VDFNHPNYPPKRYD 212
           VD NHPNY P+ Y+
Sbjct: 32  VDLNHPNYLPETYN 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,867,534
Number of Sequences: 59808
Number of extensions: 195875
Number of successful extensions: 474
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)