Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I03
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 33 0.046
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 1.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.0
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 27 3.0
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.0
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 25 7.0
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 7.0
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 9.3
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.3
SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch... 25 9.3
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 32.7 bits (71), Expect = 0.046
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 130 PIMIGSRFKWPQFETADGYIRIPKGEYFQLICPTAFTNFPRNN 258
P+++GSR FE D + I K E + L+C F PR N
Sbjct: 829 PVVLGSRLIESFFEVEDNDLTIQKDELYHLLC-DQFATVPREN 870
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 389 TPNGLKSAMKNSVNFYLRTVCAWIREIISLFTRNT 493
TP+ L +A + V FYL C +I E + + T+NT
Sbjct: 93 TPSRLNTAHRPEV-FYLLECCTYILEQMQVVTKNT 126
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 43 NEFGTINRSFYMQLSDCIVDIKNDLKGNQPIMIG 144
N G S +L DCI KN L G +P++ G
Sbjct: 523 NPTGAAQPSGLDKLKDCIFLFKNTLLGIKPVLFG 556
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 34 EVSNEFGTINRSFYMQLSDC 93
++ E G++N FY ++SDC
Sbjct: 244 DIETEDGSVNSRFYQRISDC 263
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 562 KATRHRRPISNSQVLFQLNTYPYCVSRK*GYYFSYPSTHCTQIKID 425
++T+ R+ V F + Y S K G YF+ P + Q K+D
Sbjct: 223 RSTQRRKSKPKKHVAFT-DEYQVAFSDKPGKYFNQPMQYSKQFKLD 267
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 EFNKRGKYYCEVSNEFGTINRSFYMQL-SDCIVDIKNDLK 120
+F + CE + T NR FY+ L D V + +LK
Sbjct: 100 DFEGLNSHLCEREGDRSTHNRIFYLALPPDVFVSVATNLK 139
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/44 (27%), Positives = 17/44 (38%)
Frame = +1
Query: 379 FYGDTEWIKIGYEKFGQFLSAYSVCLDKRNNIPIYAKHNMDRYL 510
FYGD W+K+ F +F S + + N D L
Sbjct: 144 FYGDDTWLKLFPSAFSKFEGTTSFFVSDYTEVDNNVTRNFDHAL 187
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 551 SPTTHFELSGSIPAKYLSILCFA*IGILFL---LSKHTLY 441
S T H+ S+P ++ +L F+ G+LFL L +HT Y
Sbjct: 181 SRTYHYR---SLPGTWIFVLVFSAFGVLFLGVMLVRHTGY 217
>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 415 EKFGQFLSAYSVCLDK 462
EK+GQFL A+++ LDK
Sbjct: 168 EKYGQFLWAHNIELDK 183
>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 235 FTNFPRNNILVFCDQEISFTVNGDSYKYSDFKCTE 339
FT+F NI+ CD + + G +Y + F E
Sbjct: 143 FTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYE 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,729
Number of Sequences: 5004
Number of extensions: 63769
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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