Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I03
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0393 - 17630097-17630367,17630483-17630709                       29   2.4  
12_02_1101 - 26079214-26080368                                         28   5.5  
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592...    28   7.2  
06_01_0450 + 3185342-3185645,3185761-3185837,3185948-3186028,318...    28   7.2  
04_03_1037 - 21901989-21902468,21903308-21903526,21903984-219041...    28   7.2  
03_02_0715 + 10621789-10623243,10624074-10625018                       28   7.2  

>07_03_0393 - 17630097-17630367,17630483-17630709
          Length = 165

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 563 KGDASPTTHFELSGSIPAKYLSILCFA*IGILFLLSKHTLYADKN*PNFS 414
           KGD   +  + L  ++P  YL +  F+ + +L LLS   L AD   P  S
Sbjct: 70  KGDGRVSILYVLDENVPIFYLCLSSFSPLSLLMLLSDPNLGADNASPLLS 119


>12_02_1101 - 26079214-26080368
          Length = 384

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 154 KWPQFET-ADGYIRIPKGEYFQLI 222
           KWP+ E  ADGY R+P  E  +LI
Sbjct: 359 KWPEMEEEADGYKRLPLSELDKLI 382


>10_08_0605 +
           19158167-19158309,19158726-19158834,19159099-19159224,
           19159388-19159543,19159623-19159805,19159904-19160020,
           19160528-19160581,19160661-19160732,19160947-19161058,
           19161188-19161284,19161434-19161528,19162093-19162167,
           19162307-19162390,19162602-19162700,19163167-19163207
          Length = 520

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 148 RFKWPQFETADGYIRIPKGEYFQLICPTAFTNFPRNNILVFCDQEISFTVNGDSYKY 318
           +FK   +E  D Y R PKG  F  IC  +  N   N+ L    ++    V    ++Y
Sbjct: 88  QFKQRYYEFLD-YYRAPKGPIFLYICGESSCNGIPNSYLAVMAKKFGAAVVSPEHRY 143


>06_01_0450 +
           3185342-3185645,3185761-3185837,3185948-3186028,
           3186508-3186636,3186765-3186851,3186962-3187015,
           3187432-3187522,3187615-3187685,3187770-3187839,
           3187988-3188040,3188132-3188225,3188569-3188666,
           3190126-3190209
          Length = 430

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +1

Query: 382 YGDTEWIKIGYEKFGQFLSAYSVCLDKRNNIPIYAKHNMDRYLAGIEPESSKWVVGDASP 561
           Y   EW++   E +       SV +D R     Y     +     I+   S W  GDA P
Sbjct: 186 YKCKEWLRPLLEAYAS-RGYISVAIDSR-----YHGERANNNSTYIDALKSAWRNGDAMP 239

Query: 562 FNFDEMYDCVSQKNAISE 615
           F  D ++D +   + +SE
Sbjct: 240 FILDTVWDLIKLGDHLSE 257


>04_03_1037 -
           21901989-21902468,21903308-21903526,21903984-21904106,
           21904225-21904392
          Length = 329

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 517 IEPESSKWVVGDASPFNFDEMYDCVSQKNAI 609
           +E +  K +  D S F +DE+YD + QK A+
Sbjct: 57  VEEQQKKAMEEDPSVFAYDEVYDDMKQKAAL 87


>03_02_0715 + 10621789-10623243,10624074-10625018
          Length = 799

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 311 INIPISNVPRK*NPKFHIRGNPASTVTPNGLKSAMKNSVNFYLRTVCAWIREIIS 475
           +N+    +PR  N     + + A   TP+G ++   N+ NF  R +  WIR ++S
Sbjct: 585 LNVSPREIPRG-NHSVESQASTAGASTPSGRQT---NATNFRRRQMHDWIRSLLS 635


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,711,014
Number of Sequences: 37544
Number of extensions: 350091
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)