Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I03
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067950-3|AAG24158.2|  371|Caenorhabditis elegans Serpentine re...    30   1.2  
U80028-1|AAN73865.1|  369|Caenorhabditis elegans Serpentine rece...    29   2.1  
Z77659-3|CAB82213.2|  106|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF100307-10|AAC68930.1|  295|Caenorhabditis elegans Hypothetical...    29   2.8  
AF057309-1|AAC39023.1|   91|Caenorhabditis elegans programmed ce...    29   3.7  
Z81558-5|CAB04542.2|  543|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81459-2|CAB03828.2|  543|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z75529-7|CAE54888.1|  382|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U97592-7|AAB52874.2|  332|Caenorhabditis elegans Sperm-specific ...    27   8.6  

>AF067950-3|AAG24158.2|  371|Caenorhabditis elegans Serpentine
           receptor, class w protein137 protein.
          Length = 371

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -1

Query: 420 FFIADFNPFGVTVEA-----GLPRM*NFGFYFLGTFEIGIFIRVAVHCETYFLIAEH*DI 256
           FFIA+F P G+T+ A      +P M +   YF   F + +    A HC   F ++    I
Sbjct: 278 FFIAEF-PLGITLGATWFFLDVPGMKSIMSYFYYNFSLLLSANTATHCIVCFFMSSQYRI 336

Query: 255 VPREV 241
             ++V
Sbjct: 337 AAKQV 341


>U80028-1|AAN73865.1|  369|Caenorhabditis elegans Serpentine
           receptor, class w protein138 protein.
          Length = 369

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = -1

Query: 420 FFIADFNPFGVTVEA-----GLPRM*NFGFYFLGTFEIGIFIRVAVHCETYFLIAEH*DI 256
           FFIA+F P G+T  A      +P M     YF   F + +    A HC   F ++    I
Sbjct: 278 FFIAEF-PLGITTGATWFFLDVPGMKTIMSYFFFNFSMLLSANTATHCIVCFFMSSQYRI 336

Query: 255 VPREV 241
             ++V
Sbjct: 337 AAKQV 341


>Z77659-3|CAB82213.2|  106|Caenorhabditis elegans Hypothetical
           protein F23B12.9 protein.
          Length = 106

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 26/88 (29%), Positives = 37/88 (42%)
 Frame = +1

Query: 247 PRNNILVFCDQEISFTVNGDSYKYSDFKCTEEIEPKVSHTGQSCFYGDTEWIKIGYEKFG 426
           P +N+    D + S   N  +  YS  +     E        S F+ D+E   IGYE  G
Sbjct: 15  PMSNVF---DVQSSVFYNEKNMFYSSSQDFSSCEDSSQFADDSGFFDDSEISSIGYE-IG 70

Query: 427 QFLSAYSVCLDKRNNIPIYAKHNMDRYL 510
             L+A  +C D    +  Y+ H  DR L
Sbjct: 71  SKLAA--MCDDFDAQMMSYSAHASDRSL 96


>AF100307-10|AAC68930.1|  295|Caenorhabditis elegans Hypothetical
           protein T12B5.4 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -1

Query: 222 D*LKVFPFRYANVTVGRFELRPFE----SRTDHYWLISFEIIFDVDNTI*QLHIE*TIYC 55
           D LK   F+  ++ +GRF+  PF+     + D    + +EI + VDN I  + I   ++C
Sbjct: 232 DLLKRSEFKECSLIIGRFDSTPFKIAQLFKPDVAEDMKYEIKYSVDNKIFVIFINRQVFC 291


>AF057309-1|AAC39023.1|   91|Caenorhabditis elegans programmed cell
           death activatorEGL-1 protein.
          Length = 91

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 24/79 (30%), Positives = 33/79 (41%)
 Frame = +1

Query: 274 DQEISFTVNGDSYKYSDFKCTEEIEPKVSHTGQSCFYGDTEWIKIGYEKFGQFLSAYSVC 453
           D + S   N  +  YS  +     E        S F+ D+E   IGYE  G  L+A  +C
Sbjct: 6   DVQSSVFYNEKNMFYSSSQDFSSCEDSSQFADDSGFFDDSEISSIGYE-IGSKLAA--MC 62

Query: 454 LDKRNNIPIYAKHNMDRYL 510
            D    +  Y+ H  DR L
Sbjct: 63  DDFDAQMMSYSAHASDRSL 81


>Z81558-5|CAB04542.2|  543|Caenorhabditis elegans Hypothetical
           protein F59D12.4 protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 328 KCTEEIEPKVSHTGQSCFYGDTE-WIKIGYEKFGQFLSAYSVCLDKRNNIPIYAKHNMDR 504
           K +++ E   SH  ++    D E +    YE  G F  + S    KR   P + KH+ D+
Sbjct: 448 KDSQKSEAYYSHKAEARIQSDDEDYSDYEYESSGNFPGSGSYMSSKREYSPYFRKHD-DK 506

Query: 505 YLAGIEP 525
               IEP
Sbjct: 507 IEIVIEP 513


>Z81459-2|CAB03828.2|  543|Caenorhabditis elegans Hypothetical
           protein F59D12.4 protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 328 KCTEEIEPKVSHTGQSCFYGDTE-WIKIGYEKFGQFLSAYSVCLDKRNNIPIYAKHNMDR 504
           K +++ E   SH  ++    D E +    YE  G F  + S    KR   P + KH+ D+
Sbjct: 448 KDSQKSEAYYSHKAEARIQSDDEDYSDYEYESSGNFPGSGSYMSSKREYSPYFRKHD-DK 506

Query: 505 YLAGIEP 525
               IEP
Sbjct: 507 IEIVIEP 513


>Z75529-7|CAE54888.1|  382|Caenorhabditis elegans Hypothetical
           protein C44H9.7b protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 397 WIKIGYEKFGQFLSAYSVCLDKRNNIPIYAKHNMDR 504
           WI IG   FG  L  YS+C  +  N     K ++++
Sbjct: 338 WILIGIIIFGMILIIYSICKRRHQNREFKYKSHLEK 373


>Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical
           protein K08F9.2 protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +1

Query: 226 PTAFTNFPRNNILVFCDQEISFTVNGDSYKYSDF---KCTEEIEPKVSHTGQSCFYGDTE 396
           P    + P  + +++C+    FT+  DS   +D       +    K+S TG  C  GDT+
Sbjct: 21  PVILGSSPAGDKILYCNGNSVFTIPIDSLNSADIYTEHAHQTTVAKISPTGFYCASGDTQ 80


>U97592-7|AAB52874.2|  332|Caenorhabditis elegans Sperm-specific
           family, class rprotein 2 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 628 IHSNPQISRSSD*RNRTSHRS*KATRHRRPISNSQVL 518
           +   P+ISRSS    RT H S K  RH    ++ +++
Sbjct: 288 LSDEPKISRSSSLIRRTKHLSLKMRRHGEKSNHEEIV 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,366,329
Number of Sequences: 27780
Number of extensions: 344202
Number of successful extensions: 1081
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)