Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I03
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48770.1 68416.m05326 hypothetical protein                          30   1.1  
At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containi...    29   2.0  
At4g00480.1 68417.m00066 myc-related transcription factor (MYC1)...    29   2.6  
At2g33750.2 68415.m04139 purine permease, putative (PUP2) simila...    28   6.1  
At2g33750.1 68415.m04138 purine permease, putative (PUP2) simila...    28   6.1  
At2g27285.1 68415.m03279 expressed protein weak similarity to ma...    28   6.1  
At2g27280.1 68415.m03278 hypothetical protein                          27   8.0  

>At3g48770.1 68416.m05326 hypothetical protein
          Length = 1899

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 331 CTEEIEPKVSHTGQSCFYGDTE 396
           C EEI P +SH GQ  FY   E
Sbjct: 609 CAEEIVPSISHQGQKFFYKPCE 630


>At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containing
           protein nearly identical over 405 amino acids to DYW7
           protein of unknown function GB:CAA06829 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 42 (4), 603-613
           (2000)); contains Pfam profile PF01535: PPR repeat
          Length = 894

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/73 (24%), Positives = 37/73 (50%)
 Frame = +3

Query: 159 AAIRNGRRLHSHTERGILSINLSNGVHELPEEQYLSVLRSGNKFHSERRLL*IFRFQMYR 338
           A + N   LH  + +  LS       + +P+EQ+  + R+G+   +E+ L  +F+    +
Sbjct: 20  AKVENSPELHPKSRKKNLSFTKKKEPNIIPDEQFDYLCRNGSLLEAEKALDSLFQ----Q 75

Query: 339 GNRTQSFTYGAIL 377
           G++ +  TY  +L
Sbjct: 76  GSKVKRSTYLKLL 88


>At4g00480.1 68417.m00066 myc-related transcription factor (MYC1)
           identical to ATMYC1 GI:1853965 from [Arabidopsis
           thaliana]
          Length = 526

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
 Frame = +1

Query: 277 QEISFTVNGDSYKYSDFKCTEEIEPKVSHTGQSCFYGDTEWIKIGYEKFGQFLSAYSVCL 456
           ++++  V    + Y+ F  +   +P V   G+ C+ GD +  K  YE      S Y   L
Sbjct: 25  KQLALAVRSVQWSYAIFWSSSLTQPGVLEWGEGCYNGDMKKRKKSYE------SHYKYGL 78

Query: 457 DKRNNIPIYAKHNMDRYLAGIEPESSKWVVGDASPFNFDEMYDCVSQKNAIS-EDLS--E 627
            K       +K     YL+ +E +S   V       N D+  +C S    +S +DLS  E
Sbjct: 79  QK-------SKELRKLYLSMLEGDSGTTVSTTHDNLN-DDDDNCHSTSMMLSPDDLSDEE 130

Query: 628 WFH 636
           W++
Sbjct: 131 WYY 133


>At2g33750.2 68415.m04139 purine permease, putative (PUP2) similar
           to purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profiles PF03151: Domain of unknown
           function, DUF250, PF00892: Integral membrane protein;
           identical to cDNA putative purine permease (PUP2) mRNA,
           partial cds GI:14388590
          Length = 347

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 235 FTNFPRNNILVFCDQEISFTVNGDSYKYSDFKCTEEIEPKVSHTGQSCFYG-DTEWIKIG 411
           FT F  N I++     +   +N DS K ++    E +   +   G +  YG     +++ 
Sbjct: 134 FTPFTINAIVLLTGGAVVLALNSDSDKLANETHKEYVVGFIMTLGAALLYGFILPLVELS 193

Query: 412 YEKFGQFLSAYSVCLD 459
           Y+K GQ ++ Y++ L+
Sbjct: 194 YKKSGQRIT-YTLALE 208


>At2g33750.1 68415.m04138 purine permease, putative (PUP2) similar
           to purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profiles PF03151: Domain of unknown
           function, DUF250, PF00892: Integral membrane protein;
           identical to cDNA putative purine permease (PUP2) mRNA,
           partial cds GI:14388590
          Length = 358

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 235 FTNFPRNNILVFCDQEISFTVNGDSYKYSDFKCTEEIEPKVSHTGQSCFYG-DTEWIKIG 411
           FT F  N I++     +   +N DS K ++    E +   +   G +  YG     +++ 
Sbjct: 134 FTPFTINAIVLLTGGAVVLALNSDSDKLANETHKEYVVGFIMTLGAALLYGFILPLVELS 193

Query: 412 YEKFGQFLSAYSVCLD 459
           Y+K GQ ++ Y++ L+
Sbjct: 194 YKKSGQRIT-YTLALE 208


>At2g27285.1 68415.m03279 expressed protein weak similarity to maebl
           (GI:20087019) [Plasmodium falciparum], chimeric
           erythrocyte-binding protein MAEBL (GI:22086284)
           [Plasmodium falciparum]
          Length = 323

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 517 IEPESSKWVVGDASPFNFDEMYDCVSQK 600
           IE +  K +  D S F++DE+YD + QK
Sbjct: 54  IEEQHKKALEEDPSAFSYDEVYDDMKQK 81


>At2g27280.1 68415.m03278 hypothetical protein 
          Length = 427

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 457 DKRNNIP--IYAKHNMDRYLAGIEPESSKWVVGDASPFNFDEMYDCVSQKNAI 609
           D+ N++   I  + +  + L  IE +  K +  D S F +DE+YD +  + A+
Sbjct: 174 DEENDVEKEISRQASKTKSLKKIEKQHKKAIEEDPSAFAYDEVYDDIKHEAAL 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,287
Number of Sequences: 28952
Number of extensions: 309873
Number of successful extensions: 728
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)