Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I02
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    28   1.4  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    28   1.4  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   2.4  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    25   7.3  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   7.3  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   7.3  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    25   7.3  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    25   9.6  

>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 191 HKFPVYRLESYKRLKWDSTP*VYYSHNHIVSLLKVSYPQLFCFYF 57
           H FP YR   Y  + W     +Y +H++ V L+      + CF F
Sbjct: 268 HVFPRYRFCFYGYVLWLCWCTMYLTHHYFVDLVGGMCLAIICFVF 312


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 506 FDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRL 625
           FDH K    G     K   ++ HC+   + I G  +NVR+
Sbjct: 280 FDHSKKKVIGRFQGVKGAPSSIHCLGNVVAITGLDRNVRI 319


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 59  NKSRTAEDKKLLGDSQCGYENNIPMVCCPISNACKTPDDKPGI 187
           ++S T+ D+  L  S   Y  ++P++C  ++  C TP D  G+
Sbjct: 162 SQSYTSIDR--LNSSSSHYSKDVPLLCGSLTIDCPTPIDLRGM 202


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 161 KTPDDKPGICVGLYNCEHITYMMLDKTRKSKMDYVRQSVCNGPE 292
           +T D KP + V  Y C+   Y +  + R+    ++  S C   E
Sbjct: 190 RTSDVKPSLTVNAYTCDRCGYEVFQEIRQK--TFLPMSECPSDE 231


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 469 GDFCVHFAPXNFINN 425
           GD C+HFA  N+  N
Sbjct: 324 GDLCIHFAGCNYFKN 338


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 269 VERNPFYSFWSYLASYK*YAHSCTNRHK 186
           V R  FYS +SY +S++  A+S   RH+
Sbjct: 151 VRRPRFYSSYSYPSSHQDPAYSSFKRHR 178


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 486 TSHGYWVIFVFISHRTILLTTVSSTPQH 403
           ++ G W++   + HR ++  +V+  PQH
Sbjct: 217 SNDGRWIVTGGLDHRIVIRDSVTLEPQH 244


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 426 TVSSTPQHSLLLSSGKAVTALEHLSLRVISSGFISGGGPQHTLNVSGPLQTD 271
           T S +P ++   +SG  +T+        +S      GGP +T + SGP+  D
Sbjct: 142 TASMSPANN---TSGNNITSPNVRGELDMSGNIAMSGGPTNTASTSGPVPHD 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,693
Number of Sequences: 5004
Number of extensions: 58220
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)