Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_I02
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 30 1.4
03_06_0604 - 35006004-35008580 29 2.5
06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669 28 5.7
04_04_0415 + 25038826-25038835,25039333-25039964,25040484-250405... 28 5.7
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240... 28 5.7
11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133 28 7.5
09_04_0241 + 15962439-15962795,15962809-15963102 28 7.5
08_02_1395 - 26737972-26738418,26738505-26738738,26738887-267391... 28 7.5
03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760 28 7.5
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 27 9.9
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 27 9.9
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 287 PETFSVCCGPPPEINPEDMTLNERCSRAVTA 379
P ++ C PE+ D L R SRA+TA
Sbjct: 30 PGSYEAACSADPELGTFDTALRRRASRAITA 60
>03_06_0604 - 35006004-35008580
Length = 858
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = +2
Query: 107 CGYENNIPMVCCPISN-ACKTPDDKPGIC---VGLYNCE-HITYMMLDKTR 244
CGY P+ CP N P D G C + L NC + T + LD T+
Sbjct: 291 CGYNGTSPVCRCPSENFQLSNPADPRGGCRRKIELQNCPGNSTMLQLDNTQ 341
>06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669
Length = 387
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 490 HHKPWILGDFCVHFAPXNFINNGVFDSTTLVVAF*WKSCDS 368
H P ILG FC F F+ F ++ + W CDS
Sbjct: 65 HRAPPILGFFCAEFGRTTFVPTTAF--RPIIPSADWLLCDS 103
>04_04_0415 +
25038826-25038835,25039333-25039964,25040484-25040561,
25040588-25040833,25041598-25041684,25041860-25042024
Length = 405
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 5 SGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYENNIPMVCCPISNACKTPDD 175
+GN S Y CE +L LFR +++G C +P C PDD
Sbjct: 148 AGNGASAYLCEDVLGLFRKFHYFVRPSRIVGVGTCA----LPEAWIVGVGTCVLPDD 200
>01_06_0946 +
33220910-33222221,33223373-33223734,33223863-33224073,
33224174-33224411,33224492-33224642,33224733-33224997,
33231775-33231820,33232167-33232815,33232883-33233384,
33235023-33235360,33235466-33235676,33235769-33235992,
33236042-33236115,33236147-33236234,33236316-33236612
Length = 1655
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 449 EMNTKITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTAAHCVTGAIL-IEGTPKN 616
E++ + +Y WL+ E S D + L GGS S+ + C+ A+L +E P+N
Sbjct: 750 ELDLNLLRYSWLLWKEGRSVDLLDQLLGGSFDYSEVL----RCIQVALLCVEVQPRN 802
>11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133
Length = 997
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -3
Query: 504 LSYSITTSHGYWVIFVFISHRTILLTTVSSTPQHSLLLSSGKAVTALEHLSL 349
+ + T+H WV ISH I T + T + S LL ++T H SL
Sbjct: 1 MKVTTATAHFLWVFLASISHSVICSTLRNETDRLS-LLEFKNSITLNPHQSL 51
>09_04_0241 + 15962439-15962795,15962809-15963102
Length = 216
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -3
Query: 456 FISHRTILLTTVSSTPQHSLLLSSGKAVTALEHLSLRVISSGFISGGGPQHTLNVSGPL 280
F SHR + L P+H L + +L +R+ +S +GGG +++ G L
Sbjct: 60 FPSHRPVPL---GGQPRHMFLAGESAGANIVHNLKVRLGASRSGAGGGEDEGIDIEGGL 115
>08_02_1395 -
26737972-26738418,26738505-26738738,26738887-26739183,
26739399-26739581,26739778-26739834,26739960-26740016,
26740228-26740322,26740714-26740765,26740821-26740910
Length = 503
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -2
Query: 496 FDHHKPWILGDFCVHFAPXNFINNGVFDSTTL---VVAF*W 383
FDHH PW+ G C+ F VF +T L V AF W
Sbjct: 264 FDHHCPWV-GQ-CIGLRNYRFFYMFVFSTTLLCLYVFAFCW 302
>03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760
Length = 184
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -3
Query: 639 VLYSPKRTF-FGVPSIKIAPVTQCAAVSTYFELMSEPPHSSF 517
+ Y P R + VPS I C V F ++ PP +SF
Sbjct: 85 ITYYPSRYWALAVPSFVIVATALCMVVYVGFNFLATPPPTSF 126
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +1
Query: 520 AAMRW-LTHQFEVRAHCCTLC 579
AA+RW LTH E A CC C
Sbjct: 264 AAVRWGLTHHKESAADCCQAC 284
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 314 PPPEINPEDMTLNERCSRAVTAFPLESNN 400
P P +P ++ +E SRA +A LESNN
Sbjct: 99 PSPAASPSELGDDESWSRAPSAAELESNN 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,640,576
Number of Sequences: 37544
Number of extensions: 360266
Number of successful extensions: 819
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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