Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I02
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38320.1 68415.m04708 expressed protein                             29   2.7  
At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family prote...    29   2.7  
At2g23590.1 68415.m02815 hydrolase, alpha/beta fold family prote...    29   3.6  
At4g33380.1 68417.m04745 expressed protein                             27   8.3  
At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein ...    27   8.3  
At1g67270.1 68414.m07656 hypothetical protein                          27   8.3  

>At2g38320.1 68415.m04708 expressed protein
          Length = 410

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 227 MLDKTRKSKMDYVRQSVCNGPETFSVCCGPPPEINPEDMTLNERCSRAVTAFPLESN 397
           +L++ R  +M YV  S+  G     VC       NP+ M ++   S  +T   LE N
Sbjct: 120 LLERLRNKRMVYVGDSLNRGQWVSMVCMVSSVITNPKAMYMHNNGSNLITFKALEYN 176


>At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 263

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 464 ITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTA 568
           I  YP  +VIE E  DHM + C   L+S   +  A
Sbjct: 225 IHNYPANLVIEMEETDHMPMFCKPQLLSDHLLAIA 259


>At2g23590.1 68415.m02815 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 272

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 464 ITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTA 568
           I  YP  +VIE E  DH+ L C   L+S   +  A
Sbjct: 234 IDNYPPNLVIEMEGTDHLPLFCKPQLLSDHLLAIA 268


>At4g33380.1 68417.m04745 expressed protein
          Length = 328

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 520 AAMRW-LTHQFEVRAHCCTLC 579
           AA+RW LTH  E  A CC  C
Sbjct: 229 AAVRWGLTHHKESAADCCQAC 249


>At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 443

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 496 FDHHKPWILGDFCVHFAPXNFINNGVFDSTTL---VVAF*W 383
           FDHH PW+ G  C+      F    VF +T L   V AF W
Sbjct: 175 FDHHCPWV-GQ-CIGMRNYRFFFMFVFSTTLLCIYVFAFCW 213


>At1g67270.1 68414.m07656 hypothetical protein
          Length = 506

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
 Frame = +2

Query: 179 PGICVGLYNCEHITYMMLDKTRKSK-MDYVRQSV---CNGPETFSVCCGPPPEINPEDM- 343
           PG  VG+ +       ++DK +++K  D +++ +      PE  S+ C    +I  E+  
Sbjct: 161 PGTEVGILDVPKEKKKVVDKRKRAKPSDKLKEEIQLEAQLPEGISLTCVSRIDIPTEEAG 220

Query: 344 ---TLNERCSRAVTAFPLESNNECCGVEDTVVNKIVRCEMNTKITQY 475
               L E CS    A  L+      G  +T+V ++  C  NT+  QY
Sbjct: 221 NVCQLFEFCSAFGKALALKE-----GHAETIVRELFICGRNTRRQQY 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,425,938
Number of Sequences: 28952
Number of extensions: 300791
Number of successful extensions: 704
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)