Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I01
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)         43   2e-04
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)                  29   3.8  
SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_10769| Best HMM Match : AnfG_VnfG (HMM E-Value=0.76)                27   8.8  
SB_18589| Best HMM Match : Filament (HMM E-Value=0.024)                27   8.8  

>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
          Length = 282

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
 Frame = +2

Query: 62  EYFYGVTLSESHQSETWDPEAKAEYPR----SNKLVIRQALLGPDAKADELNVVQVETMS 229
           E F+G  LS+S  + TW+PE   E        +KLV+ QA LG  +KA   ++V+V +M 
Sbjct: 7   EDFWGCVLSKSEDTVTWNPEFDGEDTLLGQIEHKLVLSQACLG--SKATGKSMVEVTSMD 64

Query: 230 LQ-ESVKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQG 343
            + +     +  L+ G T    L+  F   PV F L  G
Sbjct: 65  FKGDDSTHTIVSLREGATEMCALNLAF-SPPVTFKLASG 102


>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
          Length = 873

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 146 NKLVIRQALLGPDAKADELNVVQVETMSLQ 235
           NKLV+ Q LLG  AK + + +++ E   L+
Sbjct: 304 NKLVLEQQLLGLSAKEERIEILEEENKKLK 333


>SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 336 IRVNMTGASGNSKSKRACLVSPAFNTATGIFTDSCNDI 223
           I VN   AS N    R C +S    T++G   ++CND+
Sbjct: 538 ILVNYFTASPNMTGFRLCQISVLNKTSSGQTEEACNDL 575


>SB_10769| Best HMM Match : AnfG_VnfG (HMM E-Value=0.76)
          Length = 88

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 185 AKADELNVVQVETMSLQESVKIPVAVLKAGETRHAR 292
           AK+ E NV+  +  SLQ+S++  +  L A + +HAR
Sbjct: 53  AKSAENNVLSEQVTSLQDSLQHRLVELSALQQQHAR 88


>SB_18589| Best HMM Match : Filament (HMM E-Value=0.024)
          Length = 324

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 185 AKADELNVVQVETMSLQESVKIPVAVLKAGETRHAR 292
           AK+ E NV+  +  SLQ+S++  +  L A + +HAR
Sbjct: 127 AKSAENNVLSEQVTSLQDSLQHRLVELSALQQQHAR 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,013,889
Number of Sequences: 59808
Number of extensions: 250136
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)