Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_I01
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75130.1 68414.m08725 cytochrome P450 family protein similar ...    30   1.0  
At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    29   2.4  
At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogen...    28   4.1  
At1g24267.1 68414.m03062 expressed protein                             28   5.5  
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    27   7.2  
At3g08030.2 68416.m00981 expressed protein contains Pfam profile...    27   9.6  
At3g08030.1 68416.m00980 expressed protein contains Pfam profile...    27   9.6  
At2g01810.1 68415.m00111 PHD finger family protein contains Pfam...    27   9.6  

>At1g75130.1 68414.m08725 cytochrome P450 family protein similar to
           Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus]
          Length = 505

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +2

Query: 95  HQSETWDPEAKAEYPRSNKLVIRQ-ALLGPDAKADELNVVQVETMSLQESVKIPVAVLKA 271
           H  ETW  +A+   PR  +   +Q ALL P        V Q   +++ E+  +   +LK 
Sbjct: 414 HDKETWGDDAEEFNPRRFEDPKKQSALLVPFGLGPRTCVGQ--NLAVNEAKTVLATILKY 471

Query: 272 GETRHARLDFEFPDAPVIFTLIQGSGPVHLI 364
              R   L   +  APV+F  +Q     HL+
Sbjct: 472 YSFR---LSPSYAHAPVLFVTLQPQNGAHLL 499


>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
           PF03568: Peptidase family C50
          Length = 1773

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 96  ISQKHGTQRLKQNI-HAVISWLSVKHYLVRTLKQMSLMLFRW 218
           I QK   ++++QNI H + +WLS +H L+R L     ++ +W
Sbjct: 534 ILQKCSRRKIRQNIVHILENWLSAEH-LIRRLPGPEAIVKQW 574


>At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogenase
           family protein contains Pfam profile PF00107:
           oxidoreductase, zinc-binding dehydrogenase family
          Length = 386

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/85 (23%), Positives = 34/85 (40%)
 Frame = +2

Query: 68  FYGVTLSESHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQESVK 247
           F  ++ S    S   +  A A  P+  K  +     G D    E N+V  E    Q  +K
Sbjct: 52  FLKISASSQSASAAVNVTADASIPKEMKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIK 111

Query: 248 IPVAVLKAGETRHARLDFEFPDAPV 322
           +  A L   + +  +  F+  D+P+
Sbjct: 112 VVAAALNPVDAKRRQGKFKATDSPL 136


>At1g24267.1 68414.m03062 expressed protein 
          Length = 343

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 471 KMMKRVNQRVRSQKCQTTLKAKPLHPRRMRRSEPPVSPRDRRA 599
           K ++  N+ + S      L+A P+ P     S PP SPR+ ++
Sbjct: 230 KRIQESNKALPSTSAVPALEAAPMTPSSRTLSLPPASPRESQS 272


>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 211 SGGDNVITGVGKNTSRSIESRRDKTCTLGL*VPRCTCHIHSYTGFRT 351
           S G NVI+GV K  +++         +L     R +CH H Y   +T
Sbjct: 470 SAGGNVISGVNKGKAKTFRI----ALSLAHGSVRVSCHFHHYRSLKT 512


>At3g08030.2 68416.m00981 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 323

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 182 DAKADELNVVQVETMSLQESVKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQG 343
           DAK D    + VE  + ++++K+P   +  G  + A   F+  +A    T   G
Sbjct: 244 DAKNDCHGSMMVEAFAARDTLKVPHTSVGGGHVKTASFKFKAVEARTRITFFSG 297


>At3g08030.1 68416.m00980 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 365

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 182 DAKADELNVVQVETMSLQESVKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQG 343
           DAK D    + VE  + ++++K+P   +  G  + A   F+  +A    T   G
Sbjct: 286 DAKNDCHGSMMVEAFAARDTLKVPHTSVGGGHVKTASFKFKAVEARTRITFFSG 339


>At2g01810.1 68415.m00111 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 477 MKRVNQRVRSQKCQTTLKAKPLHPRRMRRSEPPVSPRD 590
           ++ +N RV+ QK +   K KP        + P +SP D
Sbjct: 448 LRTINSRVQEQKRKKKRKVKPQETSECTSTTPGLSPYD 485


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,162,225
Number of Sequences: 28952
Number of extensions: 167793
Number of successful extensions: 479
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)